Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04620

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04615 and CSW01_04620 are separated by 14 nucleotidesCSW01_04620 and CSW01_04625 are separated by 48 nucleotidesCSW01_04625 and CSW01_04630 are separated by 1 nucleotides CSW01_04615: CSW01_04615 - hypothetical protein, at 959,255 to 961,516 _04615 CSW01_04620: CSW01_04620 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 961,531 to 962,376 _04620 CSW01_04625: CSW01_04625 - SecY-interacting protein, at 962,425 to 963,021 _04625 CSW01_04630: CSW01_04630 - hypothetical protein, at 963,023 to 963,799 _04630 Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1at 960.599 kb on - strand, within CSW01_04615at 960.696 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.767 kb on - strand, within CSW01_04615at 960.767 kb on - strand, within CSW01_04615at 960.781 kb on + strand, within CSW01_04615at 960.791 kb on + strand, within CSW01_04615at 960.847 kb on - strand, within CSW01_04615at 960.855 kb on - strand, within CSW01_04615at 960.875 kb on + strand, within CSW01_04615at 960.876 kb on - strand, within CSW01_04615at 960.878 kb on - strand, within CSW01_04615at 960.927 kb on + strand, within CSW01_04615at 960.927 kb on + strand, within CSW01_04615at 960.935 kb on - strand, within CSW01_04615at 960.993 kb on - strand, within CSW01_04615at 961.000 kb on + strand, within CSW01_04615at 961.027 kb on - strand, within CSW01_04615at 961.050 kb on + strand, within CSW01_04615at 961.080 kb on - strand, within CSW01_04615at 961.136 kb on - strand, within CSW01_04615at 961.144 kb on - strand, within CSW01_04615at 961.186 kb on - strand, within CSW01_04615at 961.360 kb on + strandat 961.360 kb on + strandat 961.360 kb on + strandat 961.360 kb on + strandat 961.368 kb on - strandat 961.368 kb on - strandat 961.368 kb on - strandat 961.405 kb on - strandat 961.430 kb on + strandat 961.437 kb on + strandat 961.445 kb on - strandat 961.445 kb on - strandat 961.522 kb on + strandat 961.524 kb on - strandat 961.566 kb on - strandat 961.589 kb on + strandat 961.597 kb on + strandat 961.597 kb on + strandat 961.605 kb on - strandat 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.647 kb on + strand, within CSW01_04620at 961.693 kb on - strand, within CSW01_04620at 961.717 kb on + strand, within CSW01_04620at 961.727 kb on + strand, within CSW01_04620at 961.727 kb on + strand, within CSW01_04620at 961.735 kb on + strand, within CSW01_04620at 961.735 kb on - strand, within CSW01_04620at 961.735 kb on - strand, within CSW01_04620at 961.756 kb on - strand, within CSW01_04620at 961.783 kb on - strand, within CSW01_04620at 961.842 kb on + strand, within CSW01_04620at 961.845 kb on - strand, within CSW01_04620at 961.854 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.864 kb on - strand, within CSW01_04620at 961.864 kb on - strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.869 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.887 kb on - strand, within CSW01_04620at 961.897 kb on + strand, within CSW01_04620at 961.959 kb on + strand, within CSW01_04620at 961.959 kb on + strand, within CSW01_04620at 961.975 kb on - strand, within CSW01_04620at 961.991 kb on - strand, within CSW01_04620at 962.002 kb on + strand, within CSW01_04620at 962.017 kb on + strand, within CSW01_04620at 962.026 kb on + strand, within CSW01_04620at 962.034 kb on - strand, within CSW01_04620at 962.041 kb on + strand, within CSW01_04620at 962.084 kb on - strand, within CSW01_04620at 962.104 kb on - strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.205 kb on - strand, within CSW01_04620at 962.256 kb on - strand, within CSW01_04620at 962.272 kb on + strand, within CSW01_04620at 962.291 kb on - strand, within CSW01_04620at 962.310 kb on - strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.349 kb on + strandat 962.442 kb on - strandat 962.488 kb on + strand, within CSW01_04625at 962.494 kb on + strand, within CSW01_04625at 962.496 kb on - strand, within CSW01_04625at 962.580 kb on + strand, within CSW01_04625at 962.709 kb on + strand, within CSW01_04625at 962.731 kb on + strand, within CSW01_04625at 962.732 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.741 kb on - strand, within CSW01_04625at 962.751 kb on - strand, within CSW01_04625at 962.786 kb on - strand, within CSW01_04625at 962.832 kb on + strand, within CSW01_04625at 962.836 kb on + strand, within CSW01_04625at 962.854 kb on - strand, within CSW01_04625at 962.876 kb on + strand, within CSW01_04625at 962.941 kb on + strand, within CSW01_04625at 962.943 kb on + strand, within CSW01_04625at 962.973 kb on - strandat 963.062 kb on + strandat 963.087 kb on - strandat 963.095 kb on + strandat 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.160 kb on - strand, within CSW01_04630at 963.242 kb on + strand, within CSW01_04630at 963.252 kb on + strand, within CSW01_04630at 963.304 kb on + strand, within CSW01_04630at 963.309 kb on + strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.360 kb on + strand, within CSW01_04630at 963.368 kb on + strand, within CSW01_04630at 963.376 kb on + strand, within CSW01_04630at 963.376 kb on - strand, within CSW01_04630

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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960,599 - CSW01_04615 0.59 -1.1
960,696 + CSW01_04615 0.64 +0.8
960,719 + CSW01_04615 0.65 -0.1
960,719 + CSW01_04615 0.65 -1.0
960,719 + CSW01_04615 0.65 -0.3
960,719 + CSW01_04615 0.65 +0.5
960,727 - CSW01_04615 0.65 +0.8
960,727 - CSW01_04615 0.65 -0.1
960,727 - CSW01_04615 0.65 -0.4
960,767 - CSW01_04615 0.67 +0.1
960,767 - CSW01_04615 0.67 -0.0
960,781 + CSW01_04615 0.67 -0.1
960,791 + CSW01_04615 0.68 +0.1
960,847 - CSW01_04615 0.70 -0.2
960,855 - CSW01_04615 0.71 -0.1
960,875 + CSW01_04615 0.72 -0.8
960,876 - CSW01_04615 0.72 +0.2
960,878 - CSW01_04615 0.72 -0.0
960,927 + CSW01_04615 0.74 +0.0
960,927 + CSW01_04615 0.74 -1.0
960,935 - CSW01_04615 0.74 -0.1
960,993 - CSW01_04615 0.77 +0.5
961,000 + CSW01_04615 0.77 +0.2
961,027 - CSW01_04615 0.78 +1.4
961,050 + CSW01_04615 0.79 -0.5
961,080 - CSW01_04615 0.81 -0.6
961,136 - CSW01_04615 0.83 +0.1
961,144 - CSW01_04615 0.84 -1.0
961,186 - CSW01_04615 0.85 -0.0
961,360 + +0.1
961,360 + +0.0
961,360 + +0.5
961,360 + -0.2
961,368 - -0.6
961,368 - -1.6
961,368 - -1.2
961,405 - +0.3
961,430 + +0.2
961,437 + -0.5
961,445 - +0.1
961,445 - +0.1
961,522 + -0.3
961,524 - +0.3
961,566 - -0.7
961,589 + -0.6
961,597 + -0.1
961,597 + -0.2
961,605 - +0.2
961,634 + CSW01_04620 0.12 -1.1
961,634 + CSW01_04620 0.12 -1.1
961,634 + CSW01_04620 0.12 -1.0
961,634 + CSW01_04620 0.12 -0.3
961,647 + CSW01_04620 0.14 +1.3
961,693 - CSW01_04620 0.19 -0.6
961,717 + CSW01_04620 0.22 -0.7
961,727 + CSW01_04620 0.23 -0.2
961,727 + CSW01_04620 0.23 -0.5
961,735 + CSW01_04620 0.24 -0.7
961,735 - CSW01_04620 0.24 -0.9
961,735 - CSW01_04620 0.24 -0.3
961,756 - CSW01_04620 0.27 -0.3
961,783 - CSW01_04620 0.30 -0.0
961,842 + CSW01_04620 0.37 +0.4
961,845 - CSW01_04620 0.37 -0.3
961,854 + CSW01_04620 0.38 +0.5
961,856 + CSW01_04620 0.38 +0.9
961,856 + CSW01_04620 0.38 +0.2
961,856 + CSW01_04620 0.38 +0.3
961,856 + CSW01_04620 0.38 -0.5
961,856 + CSW01_04620 0.38 -0.1
961,864 - CSW01_04620 0.39 -0.7
961,864 - CSW01_04620 0.39 -0.3
961,866 + CSW01_04620 0.40 -0.2
961,866 + CSW01_04620 0.40 -0.6
961,866 + CSW01_04620 0.40 -0.3
961,869 - CSW01_04620 0.40 -1.3
961,874 - CSW01_04620 0.41 -1.5
961,874 - CSW01_04620 0.41 -0.9
961,874 - CSW01_04620 0.41 -0.6
961,887 - CSW01_04620 0.42 +0.1
961,897 + CSW01_04620 0.43 -0.3
961,959 + CSW01_04620 0.51 -0.9
961,959 + CSW01_04620 0.51 -0.3
961,975 - CSW01_04620 0.52 -0.1
961,991 - CSW01_04620 0.54 -0.6
962,002 + CSW01_04620 0.56 -0.5
962,017 + CSW01_04620 0.57 -0.7
962,026 + CSW01_04620 0.59 +0.0
962,034 - CSW01_04620 0.59 -0.5
962,041 + CSW01_04620 0.60 +0.5
962,084 - CSW01_04620 0.65 +0.2
962,104 - CSW01_04620 0.68 -0.5
962,186 + CSW01_04620 0.77 -0.2
962,186 + CSW01_04620 0.77 -0.6
962,194 - CSW01_04620 0.78 -0.8
962,194 - CSW01_04620 0.78 +0.0
962,205 - CSW01_04620 0.80 -0.6
962,256 - CSW01_04620 0.86 -1.0
962,272 + CSW01_04620 0.88 -1.2
962,291 - CSW01_04620 0.90 +0.7
962,310 - -0.5
962,334 + -2.4
962,334 + -0.6
962,334 + -1.2
962,334 + -1.3
962,342 - -0.5
962,342 - -1.3
962,342 - -0.1
962,349 + +0.1
962,442 - +0.1
962,488 + CSW01_04625 0.11 +0.3
962,494 + CSW01_04625 0.12 -0.3
962,496 - CSW01_04625 0.12 -0.2
962,580 + CSW01_04625 0.26 -0.3
962,709 + CSW01_04625 0.48 +0.5
962,731 + CSW01_04625 0.51 +0.3
962,732 - CSW01_04625 0.51 +0.8
962,741 - CSW01_04625 0.53 +0.9
962,741 - CSW01_04625 0.53 +1.2
962,741 - CSW01_04625 0.53 +0.1
962,751 - CSW01_04625 0.55 -0.0
962,786 - CSW01_04625 0.60 +0.3
962,832 + CSW01_04625 0.68 +0.3
962,836 + CSW01_04625 0.69 -1.3
962,854 - CSW01_04625 0.72 -0.1
962,876 + CSW01_04625 0.76 +0.4
962,941 + CSW01_04625 0.86 +0.5
962,943 + CSW01_04625 0.87 -0.1
962,973 - +0.0
963,062 + -0.7
963,087 - -0.9
963,095 + +0.2
963,136 - CSW01_04630 0.15 +0.3
963,136 - CSW01_04630 0.15 -0.3
963,136 - CSW01_04630 0.15 -0.2
963,136 - CSW01_04630 0.15 -0.5
963,160 - CSW01_04630 0.18 -0.3
963,242 + CSW01_04630 0.28 -0.3
963,252 + CSW01_04630 0.29 -0.2
963,304 + CSW01_04630 0.36 +0.1
963,309 + CSW01_04630 0.37 +0.4
963,317 - CSW01_04630 0.38 -0.5
963,317 - CSW01_04630 0.38 +0.6
963,360 + CSW01_04630 0.43 +0.2
963,368 + CSW01_04630 0.44 +0.6
963,376 + CSW01_04630 0.45 +0.1
963,376 - CSW01_04630 0.45 -0.0

Or see this region's nucleotide sequence