Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04460

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04455 and CSW01_04460 are separated by 355 nucleotidesCSW01_04460 and CSW01_04465 are separated by 100 nucleotidesCSW01_04465 and CSW01_04470 overlap by 4 nucleotides CSW01_04455: CSW01_04455 - tRNA adenosine(34) deaminase TadA, at 927,749 to 928,330 _04455 CSW01_04460: CSW01_04460 - lytic transglycosylase F, at 928,686 to 930,278 _04460 CSW01_04465: CSW01_04465 - hypothetical protein, at 930,379 to 930,591 _04465 CSW01_04470: CSW01_04470 - phosphoribosylformylglycinamidine synthase, at 930,588 to 934,481 _04470 Position (kb) 928 929 930 931Strain fitness (log2 ratio) -2 -1 0 1at 928.348 kb on + strandat 928.361 kb on - strandat 928.379 kb on - strandat 928.446 kb on - strandat 928.467 kb on + strandat 928.508 kb on + strandat 928.709 kb on + strandat 928.852 kb on - strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.224 kb on + strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.272 kb on + strand, within CSW01_04460at 929.280 kb on - strand, within CSW01_04460at 929.426 kb on - strand, within CSW01_04460at 929.523 kb on + strand, within CSW01_04460at 929.523 kb on + strand, within CSW01_04460at 929.605 kb on + strand, within CSW01_04460at 929.605 kb on + strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.613 kb on - strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.630 kb on + strand, within CSW01_04460at 929.638 kb on + strand, within CSW01_04460at 929.638 kb on - strand, within CSW01_04460at 929.641 kb on - strand, within CSW01_04460at 929.646 kb on - strand, within CSW01_04460at 929.655 kb on + strand, within CSW01_04460at 929.709 kb on - strand, within CSW01_04460at 929.836 kb on - strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.846 kb on + strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.854 kb on - strand, within CSW01_04460at 929.910 kb on + strand, within CSW01_04460at 929.942 kb on + strand, within CSW01_04460at 929.951 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.952 kb on + strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.960 kb on - strand, within CSW01_04460at 929.978 kb on - strand, within CSW01_04460at 930.005 kb on + strand, within CSW01_04460at 930.089 kb on - strand, within CSW01_04460at 930.098 kb on - strand, within CSW01_04460at 930.219 kb on - strandat 930.238 kb on - strandat 930.296 kb on + strandat 930.296 kb on + strandat 930.303 kb on + strandat 930.304 kb on - strandat 930.348 kb on + strandat 930.484 kb on - strand, within CSW01_04465at 930.503 kb on - strand, within CSW01_04465at 930.607 kb on + strandat 930.646 kb on - strandat 930.701 kb on - strandat 930.710 kb on + strandat 930.710 kb on + strandat 930.718 kb on - strandat 930.736 kb on + strandat 930.744 kb on - strandat 930.763 kb on + strandat 930.763 kb on + strandat 930.792 kb on - strandat 930.832 kb on - strandat 930.833 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.874 kb on + strandat 930.880 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.882 kb on - strandat 930.915 kb on + strandat 930.939 kb on + strandat 930.964 kb on + strandat 931.040 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.047 kb on - strand, within CSW01_04470at 931.135 kb on - strand, within CSW01_04470at 931.158 kb on + strand, within CSW01_04470at 931.168 kb on + strand, within CSW01_04470at 931.195 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.220 kb on + strand, within CSW01_04470at 931.275 kb on - strand, within CSW01_04470

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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928,348 + +0.4
928,361 - +1.0
928,379 - +0.2
928,446 - +0.3
928,467 + -1.0
928,508 + -0.8
928,709 + -0.2
928,852 - CSW01_04460 0.10 -0.2
929,198 + CSW01_04460 0.32 +0.9
929,198 + CSW01_04460 0.32 -0.1
929,198 + CSW01_04460 0.32 -0.0
929,206 - CSW01_04460 0.33 +0.7
929,206 - CSW01_04460 0.33 -0.1
929,206 - CSW01_04460 0.33 -1.0
929,206 - CSW01_04460 0.33 -0.8
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -2.0
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 +0.2
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.8
929,222 + CSW01_04460 0.34 -0.8
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.3
929,222 + CSW01_04460 0.34 +0.8
929,222 + CSW01_04460 0.34 +0.5
929,222 + CSW01_04460 0.34 -0.5
929,222 + CSW01_04460 0.34 -0.0
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -1.5
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +0.3
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.5
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +1.1
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -2.4
929,222 + CSW01_04460 0.34 -0.0
929,222 + CSW01_04460 0.34 -0.3
929,222 + CSW01_04460 0.34 -1.0
929,222 + CSW01_04460 0.34 -0.8
929,222 + CSW01_04460 0.34 +0.1
929,222 + CSW01_04460 0.34 +0.1
929,222 + CSW01_04460 0.34 -0.3
929,224 + CSW01_04460 0.34 -1.7
929,230 - CSW01_04460 0.34 -1.7
929,230 - CSW01_04460 0.34 +0.1
929,230 - CSW01_04460 0.34 -0.3
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +0.0
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -0.0
929,230 - CSW01_04460 0.34 +0.2
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -1.0
929,230 - CSW01_04460 0.34 +0.1
929,230 - CSW01_04460 0.34 +0.6
929,230 - CSW01_04460 0.34 -1.0
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 +0.6
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.3
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +0.3
929,230 - CSW01_04460 0.34 +0.4
929,230 - CSW01_04460 0.34 -0.8
929,230 - CSW01_04460 0.34 -0.2
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 +1.3
929,230 - CSW01_04460 0.34 -1.4
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.8
929,230 - CSW01_04460 0.34 +0.7
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.6
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +1.1
929,230 - CSW01_04460 0.34 +1.1
929,230 - CSW01_04460 0.34 -0.6
929,230 - CSW01_04460 0.34 -0.2
929,272 + CSW01_04460 0.37 +0.3
929,280 - CSW01_04460 0.37 +1.4
929,426 - CSW01_04460 0.46 -0.1
929,523 + CSW01_04460 0.53 -0.1
929,523 + CSW01_04460 0.53 -0.6
929,605 + CSW01_04460 0.58 -0.4
929,605 + CSW01_04460 0.58 -1.2
929,613 - CSW01_04460 0.58 -0.5
929,613 - CSW01_04460 0.58 -1.5
929,630 + CSW01_04460 0.59 +0.0
929,630 + CSW01_04460 0.59 -0.1
929,638 + CSW01_04460 0.60 -1.3
929,638 - CSW01_04460 0.60 -0.3
929,641 - CSW01_04460 0.60 -0.5
929,646 - CSW01_04460 0.60 -0.3
929,655 + CSW01_04460 0.61 -1.0
929,709 - CSW01_04460 0.64 +0.4
929,836 - CSW01_04460 0.72 +0.1
929,846 + CSW01_04460 0.73 -0.3
929,846 + CSW01_04460 0.73 +0.8
929,846 + CSW01_04460 0.73 -0.2
929,854 - CSW01_04460 0.73 +0.2
929,854 - CSW01_04460 0.73 +0.2
929,854 - CSW01_04460 0.73 +0.8
929,854 - CSW01_04460 0.73 -1.2
929,854 - CSW01_04460 0.73 -0.6
929,910 + CSW01_04460 0.77 -0.5
929,942 + CSW01_04460 0.79 -0.2
929,951 + CSW01_04460 0.79 +0.1
929,952 + CSW01_04460 0.79 -0.7
929,952 + CSW01_04460 0.79 -0.1
929,952 + CSW01_04460 0.79 -0.5
929,952 + CSW01_04460 0.79 -0.1
929,952 + CSW01_04460 0.79 -0.9
929,952 + CSW01_04460 0.79 +0.5
929,960 - CSW01_04460 0.80 +0.2
929,960 - CSW01_04460 0.80 +0.8
929,960 - CSW01_04460 0.80 -1.3
929,978 - CSW01_04460 0.81 +0.5
930,005 + CSW01_04460 0.83 -0.1
930,089 - CSW01_04460 0.88 -1.0
930,098 - CSW01_04460 0.89 -0.9
930,219 - -0.1
930,238 - -0.8
930,296 + -0.2
930,296 + +0.0
930,303 + -0.4
930,304 - +0.1
930,348 + +0.3
930,484 - CSW01_04465 0.49 -0.1
930,503 - CSW01_04465 0.58 +0.1
930,607 + +0.9
930,646 - -0.5
930,701 - +0.7
930,710 + +0.2
930,710 + +0.1
930,718 - -0.0
930,736 + -0.1
930,744 - +0.8
930,763 + -0.0
930,763 + +0.0
930,792 - +1.0
930,832 - -0.5
930,833 + +0.3
930,872 + -0.6
930,872 + +0.2
930,872 + -0.8
930,874 + +0.3
930,874 + -0.3
930,874 + -0.3
930,874 + +0.6
930,880 - -0.0
930,882 - -0.3
930,882 - +0.8
930,882 - +0.1
930,882 - -0.6
930,882 - +0.3
930,915 + -0.5
930,939 + -1.2
930,964 + -0.8
931,040 - CSW01_04470 0.12 +1.7
931,047 - CSW01_04470 0.12 +1.1
931,047 - CSW01_04470 0.12 -0.3
931,135 - CSW01_04470 0.14 -0.6
931,158 + CSW01_04470 0.15 +0.1
931,168 + CSW01_04470 0.15 +0.2
931,195 + CSW01_04470 0.16 -0.5
931,220 + CSW01_04470 0.16 +0.5
931,220 + CSW01_04470 0.16 -0.4
931,275 - CSW01_04470 0.18 +0.2

Or see this region's nucleotide sequence