Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04455

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04450 and CSW01_04455 are separated by 68 nucleotidesCSW01_04455 and CSW01_04460 are separated by 355 nucleotides CSW01_04450: CSW01_04450 - aminobenzoyl-glutamate transporter, at 926,121 to 927,680 _04450 CSW01_04455: CSW01_04455 - tRNA adenosine(34) deaminase TadA, at 927,749 to 928,330 _04455 CSW01_04460: CSW01_04460 - lytic transglycosylase F, at 928,686 to 930,278 _04460 Position (kb) 927 928 929Strain fitness (log2 ratio) -2 -1 0 1at 926.756 kb on + strand, within CSW01_04450at 926.774 kb on + strand, within CSW01_04450at 926.826 kb on - strand, within CSW01_04450at 926.905 kb on + strand, within CSW01_04450at 926.913 kb on - strand, within CSW01_04450at 927.008 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.132 kb on - strand, within CSW01_04450at 927.136 kb on + strand, within CSW01_04450at 927.146 kb on + strand, within CSW01_04450at 927.258 kb on + strand, within CSW01_04450at 927.263 kb on + strand, within CSW01_04450at 927.276 kb on - strand, within CSW01_04450at 927.276 kb on - strand, within CSW01_04450at 927.324 kb on + strand, within CSW01_04450at 927.366 kb on - strand, within CSW01_04450at 927.427 kb on + strand, within CSW01_04450at 927.435 kb on - strand, within CSW01_04450at 927.437 kb on + strand, within CSW01_04450at 927.528 kb on + strandat 927.635 kb on + strandat 927.665 kb on + strandat 927.673 kb on - strandat 927.673 kb on - strandat 928.348 kb on + strandat 928.361 kb on - strandat 928.379 kb on - strandat 928.446 kb on - strandat 928.467 kb on + strandat 928.508 kb on + strandat 928.709 kb on + strandat 928.852 kb on - strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.198 kb on + strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.206 kb on - strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.222 kb on + strand, within CSW01_04460at 929.224 kb on + strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.230 kb on - strand, within CSW01_04460at 929.272 kb on + strand, within CSW01_04460at 929.280 kb on - strand, within CSW01_04460

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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926,756 + CSW01_04450 0.41 +0.5
926,774 + CSW01_04450 0.42 -0.6
926,826 - CSW01_04450 0.45 -0.4
926,905 + CSW01_04450 0.50 +0.5
926,913 - CSW01_04450 0.51 -1.8
927,008 + CSW01_04450 0.57 +0.1
927,102 + CSW01_04450 0.63 +0.2
927,102 + CSW01_04450 0.63 -0.8
927,102 + CSW01_04450 0.63 +0.3
927,110 - CSW01_04450 0.63 +0.8
927,110 - CSW01_04450 0.63 +0.0
927,110 - CSW01_04450 0.63 -0.7
927,132 - CSW01_04450 0.65 -0.1
927,136 + CSW01_04450 0.65 -0.4
927,146 + CSW01_04450 0.66 +0.8
927,258 + CSW01_04450 0.73 +0.1
927,263 + CSW01_04450 0.73 +0.4
927,276 - CSW01_04450 0.74 +0.1
927,276 - CSW01_04450 0.74 +0.1
927,324 + CSW01_04450 0.77 -0.0
927,366 - CSW01_04450 0.80 -1.2
927,427 + CSW01_04450 0.84 -0.3
927,435 - CSW01_04450 0.84 -0.6
927,437 + CSW01_04450 0.84 -0.6
927,528 + -0.8
927,635 + -0.4
927,665 + -0.2
927,673 - +0.3
927,673 - -2.4
928,348 + +0.4
928,361 - +1.0
928,379 - +0.2
928,446 - +0.3
928,467 + -1.0
928,508 + -0.8
928,709 + -0.2
928,852 - CSW01_04460 0.10 -0.2
929,198 + CSW01_04460 0.32 +0.9
929,198 + CSW01_04460 0.32 -0.1
929,198 + CSW01_04460 0.32 -0.0
929,206 - CSW01_04460 0.33 +0.7
929,206 - CSW01_04460 0.33 -0.1
929,206 - CSW01_04460 0.33 -1.0
929,206 - CSW01_04460 0.33 -0.8
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -2.0
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 +0.2
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.8
929,222 + CSW01_04460 0.34 -0.8
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.3
929,222 + CSW01_04460 0.34 +0.8
929,222 + CSW01_04460 0.34 +0.5
929,222 + CSW01_04460 0.34 -0.5
929,222 + CSW01_04460 0.34 -0.0
929,222 + CSW01_04460 0.34 -0.1
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -1.5
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.2
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +0.3
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.5
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +0.0
929,222 + CSW01_04460 0.34 +1.1
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -0.4
929,222 + CSW01_04460 0.34 -0.7
929,222 + CSW01_04460 0.34 -2.4
929,222 + CSW01_04460 0.34 -0.0
929,222 + CSW01_04460 0.34 -0.3
929,222 + CSW01_04460 0.34 -1.0
929,222 + CSW01_04460 0.34 -0.8
929,222 + CSW01_04460 0.34 +0.1
929,222 + CSW01_04460 0.34 +0.1
929,222 + CSW01_04460 0.34 -0.3
929,224 + CSW01_04460 0.34 -1.7
929,230 - CSW01_04460 0.34 -1.7
929,230 - CSW01_04460 0.34 +0.1
929,230 - CSW01_04460 0.34 -0.3
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +0.0
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -0.0
929,230 - CSW01_04460 0.34 +0.2
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -1.0
929,230 - CSW01_04460 0.34 +0.1
929,230 - CSW01_04460 0.34 +0.6
929,230 - CSW01_04460 0.34 -1.0
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 +0.6
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.3
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +0.3
929,230 - CSW01_04460 0.34 +0.4
929,230 - CSW01_04460 0.34 -0.8
929,230 - CSW01_04460 0.34 -0.2
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 +1.3
929,230 - CSW01_04460 0.34 -1.4
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.5
929,230 - CSW01_04460 0.34 -0.8
929,230 - CSW01_04460 0.34 +0.7
929,230 - CSW01_04460 0.34 -0.1
929,230 - CSW01_04460 0.34 -0.4
929,230 - CSW01_04460 0.34 -0.6
929,230 - CSW01_04460 0.34 -0.7
929,230 - CSW01_04460 0.34 +1.1
929,230 - CSW01_04460 0.34 +1.1
929,230 - CSW01_04460 0.34 -0.6
929,230 - CSW01_04460 0.34 -0.2
929,272 + CSW01_04460 0.37 +0.3
929,280 - CSW01_04460 0.37 +1.4

Or see this region's nucleotide sequence