Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03905

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03890 and CSW01_03895 are separated by 60 nucleotidesCSW01_03895 and CSW01_03900 are separated by 48 nucleotidesCSW01_03900 and CSW01_03905 are separated by 23 nucleotidesCSW01_03905 and CSW01_03910 are separated by 13 nucleotidesCSW01_03910 and CSW01_03915 are separated by 48 nucleotidesCSW01_03915 and CSW01_03920 are separated by 219 nucleotides CSW01_03890: CSW01_03890 - Fe-S cluster assembly scaffold IscU, at 801,198 to 801,581 _03890 CSW01_03895: CSW01_03895 - iron-sulfur cluster assembly protein IscA, at 801,642 to 801,965 _03895 CSW01_03900: CSW01_03900 - co-chaperone protein HscB, at 802,014 to 802,529 _03900 CSW01_03905: CSW01_03905 - chaperone protein HscA, at 802,553 to 804,403 _03905 CSW01_03910: CSW01_03910 - ISC system 2Fe-2S type ferredoxin, at 804,417 to 804,755 _03910 CSW01_03915: CSW01_03915 - Fe-S assembly protein IscX, at 804,804 to 804,998 _03915 CSW01_03920: CSW01_03920 - peptidase B, at 805,218 to 806,507 _03920 Position (kb) 802 803 804 805Strain fitness (log2 ratio) -1 0 1at 801.595 kb on + strandat 804.407 kb on + strandat 804.811 kb on + strandat 804.840 kb on - strand, within CSW01_03915at 804.982 kb on - strandat 805.066 kb on - strandat 805.075 kb on + strandat 805.084 kb on - strandat 805.193 kb on - strandat 805.262 kb on + strandat 805.299 kb on + strandat 805.299 kb on + strandat 805.338 kb on - strandat 805.367 kb on - strand, within CSW01_03920at 805.367 kb on - strand, within CSW01_03920

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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801,595 + +0.0
804,407 + +0.6
804,811 + -0.6
804,840 - CSW01_03915 0.18 -0.4
804,982 - -0.2
805,066 - -0.2
805,075 + +0.1
805,084 - -0.4
805,193 - -0.2
805,262 + -0.6
805,299 + -0.4
805,299 + -0.3
805,338 - +0.9
805,367 - CSW01_03920 0.12 +0.2
805,367 - CSW01_03920 0.12 +0.0

Or see this region's nucleotide sequence