Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03890

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03885 and CSW01_03890 are separated by 36 nucleotidesCSW01_03890 and CSW01_03895 are separated by 60 nucleotidesCSW01_03895 and CSW01_03900 are separated by 48 nucleotidesCSW01_03900 and CSW01_03905 are separated by 23 nucleotides CSW01_03885: CSW01_03885 - IscS subfamily cysteine desulfurase, at 799,947 to 801,161 _03885 CSW01_03890: CSW01_03890 - Fe-S cluster assembly scaffold IscU, at 801,198 to 801,581 _03890 CSW01_03895: CSW01_03895 - iron-sulfur cluster assembly protein IscA, at 801,642 to 801,965 _03895 CSW01_03900: CSW01_03900 - co-chaperone protein HscB, at 802,014 to 802,529 _03900 CSW01_03905: CSW01_03905 - chaperone protein HscA, at 802,553 to 804,403 _03905 Position (kb) 801 802Strain fitness (log2 ratio) -1 0 1at 801.155 kb on + strandat 801.155 kb on + strandat 801.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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801,155 + -0.6
801,155 + +0.7
801,595 + +0.0

Or see this region's nucleotide sequence