Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03495

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03490 and CSW01_03495 are separated by 30 nucleotidesCSW01_03495 and CSW01_03500 are separated by 273 nucleotides CSW01_03490: CSW01_03490 - peptide chain release factor 2, at 708,204 to 709,302 _03490 CSW01_03495: CSW01_03495 - lysine--tRNA ligase, at 709,333 to 710,865 _03495 CSW01_03500: CSW01_03500 - sigma-54-dependent Fis family transcriptional regulator, at 711,139 to 712,473 _03500 Position (kb) 709 710 711Strain fitness (log2 ratio) -1 0 1at 710.867 kb on - strandat 710.901 kb on - strandat 710.901 kb on - strandat 711.075 kb on + strandat 711.075 kb on + strandat 711.158 kb on - strandat 711.176 kb on + strandat 711.242 kb on + strandat 711.242 kb on + strandat 711.264 kb on - strandat 711.321 kb on - strand, within CSW01_03500at 711.373 kb on - strand, within CSW01_03500at 711.396 kb on - strand, within CSW01_03500at 711.403 kb on + strand, within CSW01_03500at 711.403 kb on - strand, within CSW01_03500at 711.408 kb on + strand, within CSW01_03500at 711.579 kb on - strand, within CSW01_03500at 711.600 kb on + strand, within CSW01_03500at 711.695 kb on - strand, within CSW01_03500at 711.845 kb on - strand, within CSW01_03500at 711.847 kb on - strand, within CSW01_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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710,867 - -0.0
710,901 - -0.2
710,901 - +0.2
711,075 + +0.5
711,075 + -0.1
711,158 - -0.2
711,176 + +0.1
711,242 + +0.4
711,242 + +0.4
711,264 - +0.2
711,321 - CSW01_03500 0.14 +0.0
711,373 - CSW01_03500 0.18 +0.2
711,396 - CSW01_03500 0.19 +0.1
711,403 + CSW01_03500 0.20 -0.5
711,403 - CSW01_03500 0.20 +0.7
711,408 + CSW01_03500 0.20 +0.1
711,579 - CSW01_03500 0.33 +0.5
711,600 + CSW01_03500 0.35 -0.7
711,695 - CSW01_03500 0.42 +0.1
711,845 - CSW01_03500 0.53 -1.2
711,847 - CSW01_03500 0.53 -0.6

Or see this region's nucleotide sequence