Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03450

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03440 and CSW01_03445 are separated by 232 nucleotidesCSW01_03445 and CSW01_03450 overlap by 65 nucleotidesCSW01_03450 and CSW01_03455 are separated by 110 nucleotidesCSW01_03455 and CSW01_03460 overlap by 40 nucleotidesCSW01_03460 and CSW01_03465 overlap by 12 nucleotides CSW01_03440: CSW01_03440 - bifunctional diguanylate cyclase/phosphodiesterase, at 696,099 to 698,153 _03440 CSW01_03445: CSW01_03445 - SCP2 domain-containing protein, at 698,386 to 698,913 _03445 CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 CSW01_03455: CSW01_03455 - DNA polymerase III subunit psi, at 699,511 to 699,918 _03455 CSW01_03460: CSW01_03460 - ribosomal-protein-alanine N-acetyltransferase, at 699,879 to 700,364 _03460 CSW01_03465: CSW01_03465 - GGDEF-domain containing protein, at 700,353 to 702,410 _03465 Position (kb) 698 699 700Strain fitness (log2 ratio) -2 -1 0 1at 697.904 kb on - strand, within CSW01_03440at 697.980 kb on - strandat 698.035 kb on - strandat 698.080 kb on + strandat 698.124 kb on - strandat 698.139 kb on + strandat 698.147 kb on - strandat 698.147 kb on - strandat 698.194 kb on - strandat 698.207 kb on - strandat 698.230 kb on - strandat 698.284 kb on - strandat 698.346 kb on + strandat 698.496 kb on + strand, within CSW01_03445at 698.496 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.523 kb on - strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.599 kb on - strand, within CSW01_03445at 698.600 kb on - strand, within CSW01_03445at 698.718 kb on + strand, within CSW01_03445at 698.779 kb on + strand, within CSW01_03445at 699.046 kb on + strand, within CSW01_03450at 699.065 kb on + strand, within CSW01_03450at 699.070 kb on + strand, within CSW01_03450at 699.075 kb on + strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.083 kb on - strand, within CSW01_03450at 699.100 kb on - strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.145 kb on - strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.190 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.200 kb on - strand, within CSW01_03450at 699.205 kb on + strand, within CSW01_03450at 699.251 kb on + strand, within CSW01_03450at 699.286 kb on + strand, within CSW01_03450at 699.294 kb on - strand, within CSW01_03450at 699.315 kb on - strand, within CSW01_03450at 699.330 kb on + strand, within CSW01_03450at 699.376 kb on - strandat 699.489 kb on + strandat 699.501 kb on + strandat 699.501 kb on + strandat 699.514 kb on - strandat 699.595 kb on - strand, within CSW01_03455at 699.888 kb on + strandat 699.906 kb on - strandat 699.906 kb on - strandat 699.989 kb on - strand, within CSW01_03460at 700.011 kb on + strand, within CSW01_03460at 700.026 kb on - strand, within CSW01_03460at 700.099 kb on - strand, within CSW01_03460at 700.153 kb on - strand, within CSW01_03460at 700.159 kb on - strand, within CSW01_03460at 700.160 kb on - strand, within CSW01_03460at 700.193 kb on - strand, within CSW01_03460at 700.219 kb on + strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.299 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.319 kb on + strandat 700.319 kb on + strandat 700.327 kb on - strandat 700.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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697,904 - CSW01_03440 0.88 -2.6
697,980 - +0.8
698,035 - +0.1
698,080 + -0.0
698,124 - +0.4
698,139 + +0.0
698,147 - -1.6
698,147 - -0.9
698,194 - +0.7
698,207 - +0.9
698,230 - -0.6
698,284 - -0.2
698,346 + +0.7
698,496 + CSW01_03445 0.21 -0.2
698,496 + CSW01_03445 0.21 -0.1
698,515 + CSW01_03445 0.24 +0.5
698,515 + CSW01_03445 0.24 -0.0
698,523 - CSW01_03445 0.26 +0.2
698,591 + CSW01_03445 0.39 +0.4
698,591 + CSW01_03445 0.39 +0.0
698,599 - CSW01_03445 0.40 -0.4
698,600 - CSW01_03445 0.41 +0.1
698,718 + CSW01_03445 0.63 -0.4
698,779 + CSW01_03445 0.74 +0.4
699,046 + CSW01_03450 0.36 -0.5
699,065 + CSW01_03450 0.39 +0.6
699,070 + CSW01_03450 0.40 -0.6
699,075 + CSW01_03450 0.41 +0.4
699,078 - CSW01_03450 0.41 -0.9
699,078 - CSW01_03450 0.41 -0.4
699,083 - CSW01_03450 0.42 -0.3
699,100 - CSW01_03450 0.45 +0.2
699,114 + CSW01_03450 0.48 -0.0
699,114 + CSW01_03450 0.48 -0.3
699,114 + CSW01_03450 0.48 +0.5
699,114 + CSW01_03450 0.48 -0.4
699,114 + CSW01_03450 0.48 -0.5
699,114 + CSW01_03450 0.48 -0.5
699,114 + CSW01_03450 0.48 -0.8
699,114 + CSW01_03450 0.48 +0.3
699,114 + CSW01_03450 0.48 -1.3
699,122 - CSW01_03450 0.49 +0.0
699,122 - CSW01_03450 0.49 -0.2
699,122 - CSW01_03450 0.49 +0.8
699,122 - CSW01_03450 0.49 -0.3
699,122 - CSW01_03450 0.49 +0.4
699,145 - CSW01_03450 0.54 +0.0
699,183 + CSW01_03450 0.61 +0.7
699,183 + CSW01_03450 0.61 +0.1
699,190 - CSW01_03450 0.62 -0.2
699,191 - CSW01_03450 0.62 -1.2
699,191 - CSW01_03450 0.62 -0.3
699,191 - CSW01_03450 0.62 +0.3
699,192 + CSW01_03450 0.62 +0.3
699,192 + CSW01_03450 0.62 +0.5
699,200 - CSW01_03450 0.64 +0.1
699,205 + CSW01_03450 0.64 -0.2
699,251 + CSW01_03450 0.73 +0.7
699,286 + CSW01_03450 0.79 +0.5
699,294 - CSW01_03450 0.81 -0.4
699,315 - CSW01_03450 0.84 -0.6
699,330 + CSW01_03450 0.87 +0.1
699,376 - -0.2
699,489 + -0.7
699,501 + +1.0
699,501 + -0.2
699,514 - -0.3
699,595 - CSW01_03455 0.21 -2.6
699,888 + -0.3
699,906 - -0.1
699,906 - +0.1
699,989 - CSW01_03460 0.23 +1.1
700,011 + CSW01_03460 0.27 -0.5
700,026 - CSW01_03460 0.30 -0.3
700,099 - CSW01_03460 0.45 -0.3
700,153 - CSW01_03460 0.56 +0.7
700,159 - CSW01_03460 0.58 -0.6
700,160 - CSW01_03460 0.58 +0.3
700,193 - CSW01_03460 0.65 +0.4
700,219 + CSW01_03460 0.70 -0.6
700,227 - CSW01_03460 0.72 +0.1
700,227 - CSW01_03460 0.72 -0.4
700,227 - CSW01_03460 0.72 -0.5
700,259 + CSW01_03460 0.78 -0.5
700,259 + CSW01_03460 0.78 -0.3
700,259 + CSW01_03460 0.78 -0.6
700,267 - CSW01_03460 0.80 -0.4
700,267 - CSW01_03460 0.80 -0.1
700,299 + CSW01_03460 0.86 +0.3
700,301 + CSW01_03460 0.87 +0.7
700,301 + CSW01_03460 0.87 +0.1
700,309 - CSW01_03460 0.88 +0.0
700,309 - CSW01_03460 0.88 -0.5
700,309 - CSW01_03460 0.88 -0.5
700,319 + -0.3
700,319 + +0.1
700,327 - +0.4
700,340 + +0.8

Or see this region's nucleotide sequence