Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03320 and CSW01_03325 are separated by 79 nucleotides CSW01_03325 and CSW01_03330 are separated by 527 nucleotides
CSW01_03320: CSW01_03320 - serine-type D-Ala-D-Ala carboxypeptidase, at 672,029 to 673,492
_03320
CSW01_03325: CSW01_03325 - porin, at 673,572 to 674,624
_03325
CSW01_03330: CSW01_03330 - transcription elongation factor GreA, at 675,152 to 675,625
_03330
Position (kb) 673
674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.583 kb on - strand, within CSW01_03320 at 672.689 kb on - strand, within CSW01_03320 at 672.695 kb on - strand, within CSW01_03320 at 672.748 kb on - strand, within CSW01_03320 at 672.767 kb on + strand, within CSW01_03320 at 672.829 kb on + strand, within CSW01_03320 at 672.829 kb on + strand, within CSW01_03320 at 672.837 kb on - strand, within CSW01_03320 at 672.837 kb on - strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.865 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.900 kb on + strand, within CSW01_03320 at 672.902 kb on + strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 672.908 kb on - strand, within CSW01_03320 at 673.010 kb on - strand, within CSW01_03320 at 673.065 kb on + strand, within CSW01_03320 at 673.068 kb on - strand, within CSW01_03320 at 673.119 kb on + strand, within CSW01_03320 at 673.132 kb on - strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.153 kb on + strand, within CSW01_03320 at 673.156 kb on - strand, within CSW01_03320 at 673.156 kb on - strand, within CSW01_03320 at 673.207 kb on - strand, within CSW01_03320 at 673.272 kb on + strand, within CSW01_03320 at 673.314 kb on - strand, within CSW01_03320 at 673.380 kb on - strand at 673.566 kb on - strand at 673.663 kb on - strand at 673.777 kb on - strand, within CSW01_03325 at 673.911 kb on + strand, within CSW01_03325 at 673.919 kb on - strand, within CSW01_03325 at 673.919 kb on - strand, within CSW01_03325 at 673.926 kb on + strand, within CSW01_03325 at 674.032 kb on + strand, within CSW01_03325 at 674.061 kb on - strand, within CSW01_03325 at 674.061 kb on - strand, within CSW01_03325 at 674.164 kb on + strand, within CSW01_03325 at 674.182 kb on - strand, within CSW01_03325 at 674.198 kb on - strand, within CSW01_03325 at 674.391 kb on + strand, within CSW01_03325 at 674.399 kb on - strand, within CSW01_03325 at 674.595 kb on - strand at 674.728 kb on - strand at 675.071 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.079 kb on - strand at 675.079 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.144 kb on + strand at 675.144 kb on + strand at 675.208 kb on - strand, within CSW01_03330 at 675.324 kb on - strand, within CSW01_03330 at 675.324 kb on - strand, within CSW01_03330 at 675.367 kb on + strand, within CSW01_03330 at 675.367 kb on + strand, within CSW01_03330 at 675.451 kb on + strand, within CSW01_03330 at 675.586 kb on - strand at 675.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 672,583 - CSW01_03320 0.38 +0.0 672,689 - CSW01_03320 0.45 -0.2 672,695 - CSW01_03320 0.45 -0.5 672,748 - CSW01_03320 0.49 -0.2 672,767 + CSW01_03320 0.50 -0.2 672,829 + CSW01_03320 0.55 +0.8 672,829 + CSW01_03320 0.55 +0.0 672,837 - CSW01_03320 0.55 +0.0 672,837 - CSW01_03320 0.55 +0.0 672,865 + CSW01_03320 0.57 -0.0 672,865 + CSW01_03320 0.57 -0.3 672,865 + CSW01_03320 0.57 -0.3 672,865 + CSW01_03320 0.57 +0.0 672,900 + CSW01_03320 0.59 +0.6 672,900 + CSW01_03320 0.59 +0.6 672,900 + CSW01_03320 0.59 -0.1 672,900 + CSW01_03320 0.59 -0.2 672,900 + CSW01_03320 0.59 -0.3 672,900 + CSW01_03320 0.59 -0.0 672,900 + CSW01_03320 0.59 +0.4 672,902 + CSW01_03320 0.60 +0.1 672,908 - CSW01_03320 0.60 -0.3 672,908 - CSW01_03320 0.60 +0.7 672,908 - CSW01_03320 0.60 +1.8 672,908 - CSW01_03320 0.60 +0.4 672,908 - CSW01_03320 0.60 +0.4 672,908 - CSW01_03320 0.60 -2.1 672,908 - CSW01_03320 0.60 -0.2 672,908 - CSW01_03320 0.60 -1.3 673,010 - CSW01_03320 0.67 +0.4 673,065 + CSW01_03320 0.71 -0.5 673,068 - CSW01_03320 0.71 +0.2 673,119 + CSW01_03320 0.74 -1.4 673,132 - CSW01_03320 0.75 +0.7 673,153 + CSW01_03320 0.77 -0.2 673,153 + CSW01_03320 0.77 +0.1 673,153 + CSW01_03320 0.77 -0.1 673,153 + CSW01_03320 0.77 -0.1 673,156 - CSW01_03320 0.77 -0.6 673,156 - CSW01_03320 0.77 -0.0 673,207 - CSW01_03320 0.80 +0.3 673,272 + CSW01_03320 0.85 +0.5 673,314 - CSW01_03320 0.88 -0.5 673,380 - -0.7 673,566 - +0.2 673,663 - -1.0 673,777 - CSW01_03325 0.19 -1.0 673,911 + CSW01_03325 0.32 -2.3 673,919 - CSW01_03325 0.33 -1.4 673,919 - CSW01_03325 0.33 -0.1 673,926 + CSW01_03325 0.34 -3.2 674,032 + CSW01_03325 0.44 -2.8 674,061 - CSW01_03325 0.46 -2.2 674,061 - CSW01_03325 0.46 -2.0 674,164 + CSW01_03325 0.56 -0.9 674,182 - CSW01_03325 0.58 -2.4 674,198 - CSW01_03325 0.59 -1.7 674,391 + CSW01_03325 0.78 +0.4 674,399 - CSW01_03325 0.79 +0.2 674,595 - -0.6 674,728 - +0.9 675,071 + -0.6 675,076 + +0.1 675,076 + +0.8 675,076 + +0.0 675,076 + +0.0 675,079 - -0.7 675,079 - +0.1 675,084 - -0.2 675,084 - -0.3 675,084 - -0.2 675,084 - -0.3 675,084 - +0.2 675,144 + -0.4 675,144 + -0.1 675,208 - CSW01_03330 0.12 -0.9 675,324 - CSW01_03330 0.36 -0.3 675,324 - CSW01_03330 0.36 -0.7 675,367 + CSW01_03330 0.45 -0.8 675,367 + CSW01_03330 0.45 -0.2 675,451 + CSW01_03330 0.63 -1.1 675,586 - -1.2 675,618 + -0.7
Or see this region's nucleotide sequence