Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03015

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03005 and CSW01_03010 are separated by 41 nucleotidesCSW01_03010 and CSW01_03015 are separated by 120 nucleotidesCSW01_03015 and CSW01_03020 are separated by 176 nucleotides CSW01_03005: CSW01_03005 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 595,885 to 596,628 _03005 CSW01_03010: CSW01_03010 - 50S ribosomal protein L19, at 596,670 to 597,023 _03010 CSW01_03015: CSW01_03015 - outer membrane-stress sensor serine endopeptidase DegS, at 597,144 to 598,202 _03015 CSW01_03020: CSW01_03020 - serine endoprotease DegQ, at 598,379 to 599,749 _03020 Position (kb) 597 598 599Strain fitness (log2 ratio) -1 0 1 2at 597.156 kb on + strandat 597.156 kb on + strandat 598.251 kb on + strandat 598.259 kb on - strandat 598.259 kb on - strandat 598.259 kb on - strandat 598.360 kb on + strandat 598.360 kb on + strandat 598.406 kb on + strandat 598.414 kb on - strandat 598.414 kb on - strandat 598.494 kb on - strandat 598.568 kb on - strand, within CSW01_03020at 598.574 kb on + strand, within CSW01_03020at 598.575 kb on - strand, within CSW01_03020at 598.582 kb on - strand, within CSW01_03020at 598.592 kb on - strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.604 kb on + strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.612 kb on - strand, within CSW01_03020at 598.619 kb on + strand, within CSW01_03020at 598.714 kb on + strand, within CSW01_03020at 598.722 kb on - strand, within CSW01_03020at 598.765 kb on + strand, within CSW01_03020at 598.773 kb on - strand, within CSW01_03020at 598.773 kb on - strand, within CSW01_03020at 599.012 kb on + strand, within CSW01_03020at 599.030 kb on - strand, within CSW01_03020at 599.079 kb on + strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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597,156 + +1.2
597,156 + -0.6
598,251 + -0.3
598,259 - -0.3
598,259 - -0.5
598,259 - +0.4
598,360 + -0.3
598,360 + +0.6
598,406 + +0.1
598,414 - +0.1
598,414 - +0.2
598,494 - -0.3
598,568 - CSW01_03020 0.14 -0.1
598,574 + CSW01_03020 0.14 +0.2
598,575 - CSW01_03020 0.14 +0.3
598,582 - CSW01_03020 0.15 -0.4
598,592 - CSW01_03020 0.16 +0.1
598,604 + CSW01_03020 0.16 -0.4
598,604 + CSW01_03020 0.16 +0.5
598,604 + CSW01_03020 0.16 +0.3
598,612 - CSW01_03020 0.17 -0.8
598,612 - CSW01_03020 0.17 -0.2
598,612 - CSW01_03020 0.17 +1.9
598,619 + CSW01_03020 0.18 +0.0
598,714 + CSW01_03020 0.24 +0.0
598,722 - CSW01_03020 0.25 +0.9
598,765 + CSW01_03020 0.28 +0.2
598,773 - CSW01_03020 0.29 +0.4
598,773 - CSW01_03020 0.29 +0.6
599,012 + CSW01_03020 0.46 +0.3
599,030 - CSW01_03020 0.47 -0.0
599,079 + CSW01_03020 0.51 -0.5
599,087 - CSW01_03020 0.52 +0.4
599,087 - CSW01_03020 0.52 +0.5
599,087 - CSW01_03020 0.52 +0.3
599,135 - CSW01_03020 0.55 +0.1
599,135 - CSW01_03020 0.55 -0.7
599,162 + CSW01_03020 0.57 -0.4
599,162 + CSW01_03020 0.57 -0.0
599,177 + CSW01_03020 0.58 +0.5
599,177 + CSW01_03020 0.58 +1.0
599,177 + CSW01_03020 0.58 +0.3
599,177 + CSW01_03020 0.58 +0.2
599,177 + CSW01_03020 0.58 +0.5
599,177 + CSW01_03020 0.58 -0.5

Or see this region's nucleotide sequence