Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03010

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03000 and CSW01_03005 are separated by 27 nucleotidesCSW01_03005 and CSW01_03010 are separated by 41 nucleotidesCSW01_03010 and CSW01_03015 are separated by 120 nucleotides CSW01_03000: CSW01_03000 - ribosome maturation factor RimM, at 595,303 to 595,857 _03000 CSW01_03005: CSW01_03005 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 595,885 to 596,628 _03005 CSW01_03010: CSW01_03010 - 50S ribosomal protein L19, at 596,670 to 597,023 _03010 CSW01_03015: CSW01_03015 - outer membrane-stress sensor serine endopeptidase DegS, at 597,144 to 598,202 _03015 Position (kb) 596 597 598Strain fitness (log2 ratio) -1 0 1at 597.156 kb on + strandat 597.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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597,156 + +1.2
597,156 + -0.6

Or see this region's nucleotide sequence