Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02260

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02255 and CSW01_02260 overlap by 32 nucleotidesCSW01_02260 and CSW01_02265 are separated by 208 nucleotides CSW01_02255: CSW01_02255 - C4-dicarboxylate ABC transporter substrate-binding protein, at 458,894 to 459,880 _02255 CSW01_02260: CSW01_02260 - C4-dicarboxylate ABC transporter substrate-binding protein, at 459,849 to 459,977 _02260 CSW01_02265: CSW01_02265 - arginine repressor, at 460,186 to 460,656 _02265 Position (kb) 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 458.972 kb on - strandat 459.008 kb on - strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.111 kb on - strand, within CSW01_02255at 459.118 kb on - strand, within CSW01_02255at 459.129 kb on + strand, within CSW01_02255at 459.145 kb on - strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.240 kb on - strand, within CSW01_02255at 459.333 kb on - strand, within CSW01_02255at 459.352 kb on + strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.455 kb on + strand, within CSW01_02255at 459.535 kb on + strand, within CSW01_02255at 459.550 kb on - strand, within CSW01_02255at 459.580 kb on + strand, within CSW01_02255at 459.667 kb on - strand, within CSW01_02255at 459.805 kb on - strandat 459.805 kb on - strandat 459.909 kb on + strand, within CSW01_02260at 459.917 kb on - strand, within CSW01_02260at 459.966 kb on - strandat 460.113 kb on + strandat 460.182 kb on + strandat 460.217 kb on + strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.333 kb on + strand, within CSW01_02265at 460.348 kb on + strand, within CSW01_02265at 460.356 kb on - strand, within CSW01_02265at 460.358 kb on + strand, within CSW01_02265at 460.411 kb on - strand, within CSW01_02265at 460.415 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.443 kb on - strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.483 kb on + strand, within CSW01_02265at 460.491 kb on - strand, within CSW01_02265at 460.548 kb on - strand, within CSW01_02265at 460.610 kb on + strandat 460.610 kb on + strandat 460.619 kb on + strandat 460.626 kb on - strandat 460.626 kb on - strandat 460.672 kb on + strandat 460.783 kb on - strandat 460.795 kb on - strandat 460.863 kb on - strandat 460.937 kb on + strandat 460.961 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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458,972 - +0.0
459,008 - CSW01_02255 0.12 -0.1
459,010 + CSW01_02255 0.12 -0.8
459,010 + CSW01_02255 0.12 -0.2
459,111 - CSW01_02255 0.22 -0.1
459,118 - CSW01_02255 0.23 +0.1
459,129 + CSW01_02255 0.24 +0.5
459,145 - CSW01_02255 0.25 +0.5
459,151 + CSW01_02255 0.26 +0.3
459,151 + CSW01_02255 0.26 +0.7
459,151 + CSW01_02255 0.26 +0.1
459,151 + CSW01_02255 0.26 -0.2
459,159 - CSW01_02255 0.27 +0.2
459,159 - CSW01_02255 0.27 -0.9
459,159 - CSW01_02255 0.27 +0.1
459,159 - CSW01_02255 0.27 -0.3
459,159 - CSW01_02255 0.27 -1.2
459,159 - CSW01_02255 0.27 -0.2
459,168 + CSW01_02255 0.28 -1.0
459,168 + CSW01_02255 0.28 +0.1
459,240 - CSW01_02255 0.35 -0.2
459,333 - CSW01_02255 0.44 -0.9
459,352 + CSW01_02255 0.46 +0.5
459,360 - CSW01_02255 0.47 -0.0
459,360 - CSW01_02255 0.47 -0.0
459,455 + CSW01_02255 0.57 +0.3
459,535 + CSW01_02255 0.65 -0.2
459,550 - CSW01_02255 0.66 -0.3
459,580 + CSW01_02255 0.70 -0.9
459,667 - CSW01_02255 0.78 -0.9
459,805 - +0.2
459,805 - -0.2
459,909 + CSW01_02260 0.47 -2.9
459,917 - CSW01_02260 0.53 -0.3
459,966 - -1.0
460,113 + +0.5
460,182 + -0.2
460,217 + -0.5
460,225 - +2.0
460,225 - -0.4
460,225 - -0.0
460,225 - -0.5
460,225 - -2.2
460,225 - -0.4
460,333 + CSW01_02265 0.31 -1.7
460,348 + CSW01_02265 0.34 -0.1
460,356 - CSW01_02265 0.36 -0.5
460,358 + CSW01_02265 0.37 -0.5
460,411 - CSW01_02265 0.48 +0.5
460,415 + CSW01_02265 0.49 -0.4
460,435 + CSW01_02265 0.53 -1.2
460,435 + CSW01_02265 0.53 -0.2
460,443 - CSW01_02265 0.55 +0.5
460,453 + CSW01_02265 0.57 -0.1
460,453 + CSW01_02265 0.57 -0.1
460,483 + CSW01_02265 0.63 -0.5
460,491 - CSW01_02265 0.65 -0.1
460,548 - CSW01_02265 0.77 -0.3
460,610 + -2.0
460,610 + -0.4
460,619 + -0.3
460,626 - -1.4
460,626 - -0.5
460,672 + -0.0
460,783 - +0.5
460,795 - +0.6
460,863 - +0.2
460,937 + +0.1
460,961 + +0.1

Or see this region's nucleotide sequence