Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02025

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02020 and CSW01_02025 are separated by 534 nucleotidesCSW01_02025 and CSW01_02030 are separated by 57 nucleotidesCSW01_02030 and CSW01_02035 are separated by 8 nucleotidesCSW01_02035 and CSW01_02040 are separated by 280 nucleotides CSW01_02020: CSW01_02020 - phosphoadenosine phosphosulfate reductase, at 399,187 to 399,948 _02020 CSW01_02025: CSW01_02025 - 16S ribosomal RNA, at 400,483 to 402,033 _02025 CSW01_02030: CSW01_02030 - tRNA-Ile, at 402,091 to 402,167 _02030 CSW01_02035: CSW01_02035 - tRNA-Ala, at 402,176 to 402,252 _02035 CSW01_02040: CSW01_02040 - 23S ribosomal RNA, at 402,533 to 405,448 _02040 Position (kb) 400 401 402 403Strain fitness (log2 ratio) -1 0 1at 399.483 kb on + strand, within CSW01_02020at 399.610 kb on - strand, within CSW01_02020at 399.665 kb on + strand, within CSW01_02020at 399.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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399,483 + CSW01_02020 0.39 +0.3
399,610 - CSW01_02020 0.56 -0.1
399,665 + CSW01_02020 0.63 -0.5
399,916 - +0.1

Or see this region's nucleotide sequence