Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01810

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01795 and CSW01_01800 are separated by 42 nucleotidesCSW01_01800 and CSW01_01805 are separated by 42 nucleotidesCSW01_01805 and CSW01_01810 are separated by 569 nucleotidesCSW01_01810 and CSW01_01815 are separated by 204 nucleotidesCSW01_01815 and CSW01_01820 overlap by 34 nucleotides CSW01_01795: CSW01_01795 - tRNA-Met, at 361,432 to 361,508 _01795 CSW01_01800: CSW01_01800 - tRNA-Met, at 361,551 to 361,627 _01800 CSW01_01805: CSW01_01805 - tRNA-Met, at 361,670 to 361,746 _01805 CSW01_01810: CSW01_01810 - tRNA epoxyqueuosine(34) reductase QueG, at 362,316 to 363,425 _01810 CSW01_01815: CSW01_01815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 363,630 to 364,094 _01815 CSW01_01820: CSW01_01820 - N-acetylmuramoyl-L-alanine amidase, at 364,061 to 365,806 _01820 Position (kb) 362 363 364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 361.429 kb on - strandat 361.526 kb on + strandat 361.528 kb on + strandat 361.528 kb on + strandat 361.563 kb on - strand, within CSW01_01800at 361.604 kb on + strand, within CSW01_01800at 361.653 kb on - strandat 361.916 kb on + strandat 362.063 kb on + strandat 362.323 kb on + strandat 362.375 kb on + strandat 362.393 kb on - strandat 362.451 kb on + strand, within CSW01_01810at 362.451 kb on + strand, within CSW01_01810at 362.493 kb on + strand, within CSW01_01810at 362.496 kb on - strand, within CSW01_01810at 362.496 kb on - strand, within CSW01_01810at 362.496 kb on - strand, within CSW01_01810at 362.496 kb on - strand, within CSW01_01810at 362.501 kb on - strand, within CSW01_01810at 362.547 kb on + strand, within CSW01_01810at 362.554 kb on - strand, within CSW01_01810at 362.616 kb on + strand, within CSW01_01810at 362.616 kb on + strand, within CSW01_01810at 362.659 kb on - strand, within CSW01_01810at 362.659 kb on - strand, within CSW01_01810at 362.659 kb on - strand, within CSW01_01810at 362.670 kb on + strand, within CSW01_01810at 362.686 kb on + strand, within CSW01_01810at 362.696 kb on + strand, within CSW01_01810at 362.742 kb on + strand, within CSW01_01810at 362.758 kb on - strand, within CSW01_01810at 362.760 kb on - strand, within CSW01_01810at 362.767 kb on - strand, within CSW01_01810at 362.772 kb on - strand, within CSW01_01810at 362.774 kb on + strand, within CSW01_01810at 362.774 kb on + strand, within CSW01_01810at 362.779 kb on + strand, within CSW01_01810at 362.784 kb on + strand, within CSW01_01810at 362.853 kb on - strand, within CSW01_01810at 362.886 kb on + strand, within CSW01_01810at 363.100 kb on + strand, within CSW01_01810at 363.100 kb on + strand, within CSW01_01810at 363.163 kb on - strand, within CSW01_01810at 363.215 kb on + strand, within CSW01_01810at 363.228 kb on + strand, within CSW01_01810at 363.244 kb on - strand, within CSW01_01810at 363.274 kb on + strand, within CSW01_01810at 363.291 kb on + strand, within CSW01_01810at 363.441 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.482 kb on + strandat 363.550 kb on - strandat 364.083 kb on + strandat 364.148 kb on + strandat 364.156 kb on - strandat 364.189 kb on + strandat 364.197 kb on - strandat 364.248 kb on + strand, within CSW01_01820at 364.248 kb on + strand, within CSW01_01820at 364.256 kb on - strand, within CSW01_01820at 364.266 kb on - strand, within CSW01_01820at 364.268 kb on - strand, within CSW01_01820at 364.273 kb on - strand, within CSW01_01820at 364.278 kb on - strand, within CSW01_01820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
361,429 - -0.9
361,526 + +0.0
361,528 + -0.5
361,528 + -0.4
361,563 - CSW01_01800 0.16 -0.3
361,604 + CSW01_01800 0.69 -0.7
361,653 - +1.8
361,916 + -0.4
362,063 + +0.6
362,323 + -1.0
362,375 + -0.3
362,393 - +0.3
362,451 + CSW01_01810 0.12 +0.6
362,451 + CSW01_01810 0.12 -0.2
362,493 + CSW01_01810 0.16 -1.0
362,496 - CSW01_01810 0.16 -0.4
362,496 - CSW01_01810 0.16 -0.2
362,496 - CSW01_01810 0.16 +0.4
362,496 - CSW01_01810 0.16 -0.5
362,501 - CSW01_01810 0.17 +0.0
362,547 + CSW01_01810 0.21 -0.2
362,554 - CSW01_01810 0.21 +0.1
362,616 + CSW01_01810 0.27 -0.5
362,616 + CSW01_01810 0.27 +0.1
362,659 - CSW01_01810 0.31 +0.2
362,659 - CSW01_01810 0.31 +0.2
362,659 - CSW01_01810 0.31 -1.3
362,670 + CSW01_01810 0.32 +0.2
362,686 + CSW01_01810 0.33 +0.3
362,696 + CSW01_01810 0.34 -0.4
362,742 + CSW01_01810 0.38 +0.0
362,758 - CSW01_01810 0.40 +0.4
362,760 - CSW01_01810 0.40 -0.2
362,767 - CSW01_01810 0.41 -0.2
362,772 - CSW01_01810 0.41 +0.6
362,774 + CSW01_01810 0.41 -0.3
362,774 + CSW01_01810 0.41 +0.4
362,779 + CSW01_01810 0.42 -1.9
362,784 + CSW01_01810 0.42 +0.6
362,853 - CSW01_01810 0.48 +0.3
362,886 + CSW01_01810 0.51 +0.6
363,100 + CSW01_01810 0.71 -0.1
363,100 + CSW01_01810 0.71 +0.4
363,163 - CSW01_01810 0.76 -1.5
363,215 + CSW01_01810 0.81 +0.2
363,228 + CSW01_01810 0.82 -0.3
363,244 - CSW01_01810 0.84 +0.0
363,274 + CSW01_01810 0.86 -0.9
363,291 + CSW01_01810 0.88 -1.3
363,441 - -0.5
363,446 - -0.8
363,446 - -1.3
363,446 - -0.9
363,482 + -0.2
363,550 - -0.7
364,083 + +1.2
364,148 + -2.1
364,156 - -2.6
364,189 + -2.3
364,197 - -1.8
364,248 + CSW01_01820 0.11 -4.1
364,248 + CSW01_01820 0.11 -1.3
364,256 - CSW01_01820 0.11 -3.2
364,266 - CSW01_01820 0.12 -2.0
364,268 - CSW01_01820 0.12 -2.3
364,273 - CSW01_01820 0.12 -2.8
364,278 - CSW01_01820 0.12 -3.6

Or see this region's nucleotide sequence