Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01765 and CSW01_01770 are separated by 158 nucleotides CSW01_01770 and CSW01_01775 are separated by 34 nucleotides CSW01_01775 and CSW01_01780 are separated by 156 nucleotides CSW01_01780 and CSW01_01785 are separated by 39 nucleotides CSW01_01785 and CSW01_01790 are separated by 34 nucleotides CSW01_01790 and CSW01_01795 are separated by 186 nucleotides CSW01_01795 and CSW01_01800 are separated by 42 nucleotides CSW01_01800 and CSW01_01805 are separated by 42 nucleotides
CSW01_01765: CSW01_01765 - oligoribonuclease, at 359,898 to 360,443
_01765
CSW01_01770: CSW01_01770 - tRNA-Gly, at 360,602 to 360,677
_01770
CSW01_01775: CSW01_01775 - tRNA-Gly, at 360,712 to 360,787
_01775
CSW01_01780: CSW01_01780 - tRNA-Gly, at 360,944 to 361,019
_01780
CSW01_01785: CSW01_01785 - tRNA-Met, at 361,059 to 361,135
_01785
CSW01_01790: CSW01_01790 - tRNA-Gly, at 361,170 to 361,245
_01790
CSW01_01795: CSW01_01795 - tRNA-Met, at 361,432 to 361,508
_01795
CSW01_01800: CSW01_01800 - tRNA-Met, at 361,551 to 361,627
_01800
CSW01_01805: CSW01_01805 - tRNA-Met, at 361,670 to 361,746
_01805
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1
2 at 360.574 kb on + strand at 360.574 kb on + strand at 361.071 kb on - strand, within CSW01_01785 at 361.429 kb on - strand at 361.526 kb on + strand at 361.528 kb on + strand at 361.528 kb on + strand at 361.563 kb on - strand, within CSW01_01800 at 361.604 kb on + strand, within CSW01_01800 at 361.653 kb on - strand at 361.916 kb on + strand at 362.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 360,574 + -1.5 360,574 + -1.2 361,071 - CSW01_01785 0.16 -1.3 361,429 - -0.9 361,526 + +0.0 361,528 + -0.5 361,528 + -0.4 361,563 - CSW01_01800 0.16 -0.3 361,604 + CSW01_01800 0.69 -0.7 361,653 - +1.8 361,916 + -0.4 362,063 + +0.6
Or see this region's nucleotide sequence