Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01760 and CSW01_01765 are separated by 122 nucleotides CSW01_01765 and CSW01_01770 are separated by 158 nucleotides CSW01_01770 and CSW01_01775 are separated by 34 nucleotides CSW01_01775 and CSW01_01780 are separated by 156 nucleotides CSW01_01780 and CSW01_01785 are separated by 39 nucleotides CSW01_01785 and CSW01_01790 are separated by 34 nucleotides CSW01_01790 and CSW01_01795 are separated by 186 nucleotides
CSW01_01760: CSW01_01760 - ribosome small subunit-dependent GTPase, at 358,611 to 359,775
_01760
CSW01_01765: CSW01_01765 - oligoribonuclease, at 359,898 to 360,443
_01765
CSW01_01770: CSW01_01770 - tRNA-Gly, at 360,602 to 360,677
_01770
CSW01_01775: CSW01_01775 - tRNA-Gly, at 360,712 to 360,787
_01775
CSW01_01780: CSW01_01780 - tRNA-Gly, at 360,944 to 361,019
_01780
CSW01_01785: CSW01_01785 - tRNA-Met, at 361,059 to 361,135
_01785
CSW01_01790: CSW01_01790 - tRNA-Gly, at 361,170 to 361,245
_01790
CSW01_01795: CSW01_01795 - tRNA-Met, at 361,432 to 361,508
_01795
Position (kb) 359
360
361 Strain fitness (log2 ratio) -1
0
1
2 at 359.777 kb on + strand at 359.783 kb on + strand at 359.785 kb on - strand at 359.785 kb on - strand at 359.809 kb on - strand at 359.828 kb on + strand at 360.574 kb on + strand at 360.574 kb on + strand at 361.071 kb on - strand, within CSW01_01785 at 361.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 359,777 + +2.0 359,783 + +1.0 359,785 - -0.2 359,785 - +0.2 359,809 - -0.5 359,828 + -0.4 360,574 + -1.5 360,574 + -1.2 361,071 - CSW01_01785 0.16 -1.3 361,429 - -0.9
Or see this region's nucleotide sequence