Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01760

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01755 and CSW01_01760 overlap by 8 nucleotidesCSW01_01760 and CSW01_01765 are separated by 122 nucleotidesCSW01_01765 and CSW01_01770 are separated by 158 nucleotidesCSW01_01770 and CSW01_01775 are separated by 34 nucleotides CSW01_01755: CSW01_01755 - phosphatidylserine decarboxylase proenzyme, at 357,761 to 358,618 _01755 CSW01_01760: CSW01_01760 - ribosome small subunit-dependent GTPase, at 358,611 to 359,775 _01760 CSW01_01765: CSW01_01765 - oligoribonuclease, at 359,898 to 360,443 _01765 CSW01_01770: CSW01_01770 - tRNA-Gly, at 360,602 to 360,677 _01770 CSW01_01775: CSW01_01775 - tRNA-Gly, at 360,712 to 360,787 _01775 Position (kb) 358 359 360Strain fitness (log2 ratio) -1 0 1 2at 357.619 kb on - strandat 357.643 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.661 kb on - strandat 357.661 kb on - strandat 357.718 kb on + strandat 357.728 kb on + strandat 357.746 kb on + strandat 357.754 kb on - strandat 357.756 kb on - strandat 357.772 kb on - strandat 357.772 kb on - strandat 357.774 kb on + strandat 357.774 kb on + strandat 358.645 kb on - strandat 358.647 kb on - strandat 358.656 kb on - strandat 358.696 kb on - strandat 359.777 kb on + strandat 359.783 kb on + strandat 359.785 kb on - strandat 359.785 kb on - strandat 359.809 kb on - strandat 359.828 kb on + strandat 360.574 kb on + strandat 360.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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357,619 - +1.0
357,643 + +0.1
357,653 + -0.0
357,653 + +0.1
357,653 + +0.5
357,653 + -0.6
357,653 + -0.3
357,653 + +0.3
357,661 - -0.2
357,661 - +0.2
357,718 + +0.4
357,728 + +0.5
357,746 + +0.3
357,754 - +0.4
357,756 - -0.5
357,772 - +0.6
357,772 - -0.3
357,774 + -0.2
357,774 + -0.9
358,645 - -1.0
358,647 - -0.6
358,656 - +0.2
358,696 - +0.9
359,777 + +2.0
359,783 + +1.0
359,785 - -0.2
359,785 - +0.2
359,809 - -0.5
359,828 + -0.4
360,574 + -1.5
360,574 + -1.2

Or see this region's nucleotide sequence