Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01740

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01735 and CSW01_01740 are separated by 168 nucleotidesCSW01_01740 and CSW01_01745 are separated by 142 nucleotides CSW01_01735: CSW01_01735 - peptidase M23, at 352,107 to 353,255 _01735 CSW01_01740: CSW01_01740 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 353,424 to 354,956 _01740 CSW01_01745: CSW01_01745 - EamA family transporter, at 355,099 to 356,040 _01745 Position (kb) 353 354 355Strain fitness (log2 ratio) -2 -1 0 1 2at 352.441 kb on - strand, within CSW01_01735at 352.455 kb on + strand, within CSW01_01735at 352.474 kb on + strand, within CSW01_01735at 352.503 kb on + strand, within CSW01_01735at 352.511 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.551 kb on - strand, within CSW01_01735at 352.653 kb on - strand, within CSW01_01735at 352.665 kb on + strand, within CSW01_01735at 352.679 kb on - strand, within CSW01_01735at 352.700 kb on + strand, within CSW01_01735at 352.709 kb on + strand, within CSW01_01735at 352.717 kb on - strand, within CSW01_01735at 352.721 kb on + strand, within CSW01_01735at 352.771 kb on - strand, within CSW01_01735at 352.803 kb on + strand, within CSW01_01735at 352.811 kb on - strand, within CSW01_01735at 352.857 kb on - strand, within CSW01_01735at 352.889 kb on - strand, within CSW01_01735at 352.927 kb on - strand, within CSW01_01735at 352.948 kb on + strand, within CSW01_01735at 352.958 kb on + strand, within CSW01_01735at 353.042 kb on + strand, within CSW01_01735at 353.184 kb on + strandat 353.271 kb on - strandat 353.302 kb on + strandat 353.302 kb on + strandat 353.309 kb on + strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.310 kb on - strandat 353.402 kb on - strandat 353.409 kb on - strandat 353.422 kb on + strandat 353.422 kb on + strandat 353.422 kb on + strandat 353.422 kb on + strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 354.966 kb on - strandat 355.025 kb on - strandat 355.037 kb on + strandat 355.037 kb on + strandat 355.044 kb on - strandat 355.065 kb on - strandat 355.134 kb on + strandat 355.134 kb on + strandat 355.134 kb on + strandat 355.142 kb on - strandat 355.142 kb on - strandat 355.166 kb on - strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.180 kb on + strandat 355.183 kb on - strandat 355.220 kb on - strand, within CSW01_01745at 355.225 kb on - strand, within CSW01_01745at 355.227 kb on + strand, within CSW01_01745at 355.247 kb on + strand, within CSW01_01745at 355.259 kb on - strand, within CSW01_01745at 355.267 kb on - strand, within CSW01_01745at 355.267 kb on - strand, within CSW01_01745at 355.280 kb on - strand, within CSW01_01745at 355.280 kb on - strand, within CSW01_01745at 355.339 kb on + strand, within CSW01_01745at 355.370 kb on + strand, within CSW01_01745at 355.380 kb on + strand, within CSW01_01745at 355.493 kb on - strand, within CSW01_01745at 355.509 kb on + strand, within CSW01_01745at 355.537 kb on - strand, within CSW01_01745at 355.551 kb on - strand, within CSW01_01745at 355.626 kb on + strand, within CSW01_01745at 355.634 kb on - strand, within CSW01_01745at 355.637 kb on + strand, within CSW01_01745at 355.656 kb on + strand, within CSW01_01745at 355.661 kb on + strand, within CSW01_01745at 355.683 kb on + strand, within CSW01_01745at 355.686 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.722 kb on - strand, within CSW01_01745at 355.786 kb on + strand, within CSW01_01745at 355.800 kb on - strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.819 kb on + strand, within CSW01_01745at 355.827 kb on - strand, within CSW01_01745at 355.829 kb on + strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.839 kb on + strand, within CSW01_01745at 355.842 kb on - strand, within CSW01_01745at 355.847 kb on - strand, within CSW01_01745at 355.864 kb on + strand, within CSW01_01745at 355.870 kb on - strand, within CSW01_01745at 355.872 kb on - strand, within CSW01_01745at 355.872 kb on - strand, within CSW01_01745at 355.885 kb on - strand, within CSW01_01745at 355.944 kb on + strand, within CSW01_01745at 355.944 kb on + strand, within CSW01_01745at 355.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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352,441 - CSW01_01735 0.29 -0.3
352,455 + CSW01_01735 0.30 +0.1
352,474 + CSW01_01735 0.32 -0.4
352,503 + CSW01_01735 0.34 +0.4
352,511 - CSW01_01735 0.35 -0.1
352,551 - CSW01_01735 0.39 +0.9
352,551 - CSW01_01735 0.39 -0.3
352,653 - CSW01_01735 0.48 -0.8
352,665 + CSW01_01735 0.49 +0.2
352,679 - CSW01_01735 0.50 +0.5
352,700 + CSW01_01735 0.52 +1.2
352,709 + CSW01_01735 0.52 -0.3
352,717 - CSW01_01735 0.53 +0.8
352,721 + CSW01_01735 0.53 +0.3
352,771 - CSW01_01735 0.58 +0.2
352,803 + CSW01_01735 0.61 +0.0
352,811 - CSW01_01735 0.61 +0.0
352,857 - CSW01_01735 0.65 +2.1
352,889 - CSW01_01735 0.68 -0.6
352,927 - CSW01_01735 0.71 +2.0
352,948 + CSW01_01735 0.73 -0.4
352,958 + CSW01_01735 0.74 +0.7
353,042 + CSW01_01735 0.81 +0.4
353,184 + +0.1
353,271 - -0.8
353,302 + +1.3
353,302 + -0.1
353,309 + -0.4
353,310 - +0.5
353,310 - +0.5
353,310 - -0.5
353,310 - -0.5
353,402 - -0.0
353,409 - +0.1
353,422 + -0.8
353,422 + -0.0
353,422 + +0.7
353,422 + +0.3
354,966 - -1.2
354,966 - -1.6
354,966 - -0.6
354,966 - +0.1
354,966 - +1.0
354,966 - +0.7
354,966 - -1.1
354,966 - -0.1
355,025 - -0.5
355,037 + -0.2
355,037 + +0.6
355,044 - +1.0
355,065 - +0.1
355,134 + -0.4
355,134 + -0.2
355,134 + +0.3
355,142 - -0.9
355,142 - -0.2
355,166 - +0.8
355,170 + +0.5
355,170 + -0.1
355,170 + +0.5
355,170 + -0.9
355,170 + +1.0
355,170 + +0.9
355,170 + -0.4
355,170 + +0.0
355,178 - -0.1
355,178 - -0.2
355,178 - -0.2
355,178 - -2.0
355,178 - -0.2
355,180 + +0.1
355,183 - -0.1
355,220 - CSW01_01745 0.13 -1.5
355,225 - CSW01_01745 0.13 +0.4
355,227 + CSW01_01745 0.14 +0.3
355,247 + CSW01_01745 0.16 -0.3
355,259 - CSW01_01745 0.17 +0.6
355,267 - CSW01_01745 0.18 +0.2
355,267 - CSW01_01745 0.18 +0.3
355,280 - CSW01_01745 0.19 +0.1
355,280 - CSW01_01745 0.19 +0.3
355,339 + CSW01_01745 0.25 +0.7
355,370 + CSW01_01745 0.29 +1.1
355,380 + CSW01_01745 0.30 -0.8
355,493 - CSW01_01745 0.42 +0.7
355,509 + CSW01_01745 0.44 -0.1
355,537 - CSW01_01745 0.46 +0.1
355,551 - CSW01_01745 0.48 -0.3
355,626 + CSW01_01745 0.56 +0.4
355,634 - CSW01_01745 0.57 -1.0
355,637 + CSW01_01745 0.57 +0.1
355,656 + CSW01_01745 0.59 +0.1
355,661 + CSW01_01745 0.60 +0.2
355,683 + CSW01_01745 0.62 -0.8
355,686 + CSW01_01745 0.62 +1.0
355,713 + CSW01_01745 0.65 -0.1
355,713 + CSW01_01745 0.65 +0.1
355,713 + CSW01_01745 0.65 -0.4
355,713 + CSW01_01745 0.65 +0.2
355,713 + CSW01_01745 0.65 -0.2
355,713 + CSW01_01745 0.65 -0.3
355,713 + CSW01_01745 0.65 +0.5
355,713 + CSW01_01745 0.65 -0.4
355,713 + CSW01_01745 0.65 +0.1
355,713 + CSW01_01745 0.65 +0.1
355,721 - CSW01_01745 0.66 +0.8
355,721 - CSW01_01745 0.66 +0.1
355,721 - CSW01_01745 0.66 +1.4
355,721 - CSW01_01745 0.66 -0.9
355,721 - CSW01_01745 0.66 +0.2
355,721 - CSW01_01745 0.66 -0.4
355,721 - CSW01_01745 0.66 +1.0
355,721 - CSW01_01745 0.66 +1.0
355,721 - CSW01_01745 0.66 +0.2
355,721 - CSW01_01745 0.66 -0.8
355,721 - CSW01_01745 0.66 +0.6
355,721 - CSW01_01745 0.66 +0.6
355,721 - CSW01_01745 0.66 -0.5
355,721 - CSW01_01745 0.66 -0.6
355,721 - CSW01_01745 0.66 -0.1
355,721 - CSW01_01745 0.66 +0.3
355,722 - CSW01_01745 0.66 +0.1
355,786 + CSW01_01745 0.73 +0.7
355,800 - CSW01_01745 0.74 -0.2
355,807 + CSW01_01745 0.75 -2.4
355,807 + CSW01_01745 0.75 -0.0
355,807 + CSW01_01745 0.75 -1.1
355,807 + CSW01_01745 0.75 +0.4
355,810 + CSW01_01745 0.75 -0.2
355,810 + CSW01_01745 0.75 +0.3
355,810 + CSW01_01745 0.75 +0.5
355,815 - CSW01_01745 0.76 +1.2
355,815 - CSW01_01745 0.76 -1.2
355,815 - CSW01_01745 0.76 -0.5
355,815 - CSW01_01745 0.76 -0.1
355,815 - CSW01_01745 0.76 -0.2
355,819 + CSW01_01745 0.76 +0.3
355,827 - CSW01_01745 0.77 +0.1
355,829 + CSW01_01745 0.77 -0.1
355,837 - CSW01_01745 0.78 -0.2
355,837 - CSW01_01745 0.78 -0.1
355,837 - CSW01_01745 0.78 -0.5
355,837 - CSW01_01745 0.78 +0.3
355,839 + CSW01_01745 0.79 +0.1
355,842 - CSW01_01745 0.79 +0.2
355,847 - CSW01_01745 0.79 +0.3
355,864 + CSW01_01745 0.81 +1.5
355,870 - CSW01_01745 0.82 +0.0
355,872 - CSW01_01745 0.82 -1.3
355,872 - CSW01_01745 0.82 -0.0
355,885 - CSW01_01745 0.83 +0.0
355,944 + CSW01_01745 0.90 -1.2
355,944 + CSW01_01745 0.90 +0.0
355,952 - -0.1

Or see this region's nucleotide sequence