Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01675

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01665 and CSW01_01670 are separated by 223 nucleotidesCSW01_01670 and CSW01_01675 are separated by 15 nucleotidesCSW01_01675 and CSW01_01680 are separated by 130 nucleotidesCSW01_01680 and CSW01_01685 are separated by 4 nucleotides CSW01_01665: CSW01_01665 - elongation factor Tu-A, at 334,066 to 335,250 _01665 CSW01_01670: CSW01_01670 - protein translocase subunit SecE, at 335,474 to 335,854 _01670 CSW01_01675: CSW01_01675 - transcription termination/antitermination protein NusG, at 335,870 to 336,418 _01675 CSW01_01680: CSW01_01680 - 50S ribosomal protein L11, at 336,549 to 336,977 _01680 CSW01_01685: CSW01_01685 - 50S ribosomal protein L1, at 336,982 to 337,683 _01685 Position (kb) 335 336 337Strain fitness (log2 ratio) -1 0 1at 335.266 kb on + strandat 335.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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335,266 + -0.4
335,849 + -0.2

Or see this region's nucleotide sequence