Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01640

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01635 and CSW01_01640 are separated by 49 nucleotidesCSW01_01640 and CSW01_01645 are separated by 4 nucleotidesCSW01_01645 and CSW01_01650 are separated by 35 nucleotidesCSW01_01650 and CSW01_01655 are separated by 35 nucleotidesCSW01_01655 and CSW01_01660 are separated by 13 nucleotidesCSW01_01660 and CSW01_01665 are separated by 112 nucleotides CSW01_01635: CSW01_01635 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 331,415 to 332,377 _01635 CSW01_01640: CSW01_01640 - type I pantothenate kinase, at 332,427 to 333,554 _01640 CSW01_01645: CSW01_01645 - tRNA-Thr, at 333,559 to 333,634 _01645 CSW01_01650: CSW01_01650 - tRNA-Tyr, at 333,670 to 333,754 _01650 CSW01_01655: CSW01_01655 - tRNA-Gly, at 333,790 to 333,864 _01655 CSW01_01660: CSW01_01660 - tRNA-Thr, at 333,878 to 333,953 _01660 CSW01_01665: CSW01_01665 - elongation factor Tu-A, at 334,066 to 335,250 _01665 Position (kb) 332 333 334Strain fitness (log2 ratio) -2 -1 0 1at 333.508 kb on + strandat 334.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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333,508 + -0.7
334,070 - -2.0

Or see this region's nucleotide sequence