Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01630

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01620 and CSW01_01625 are separated by 94 nucleotidesCSW01_01625 and CSW01_01630 are separated by 12 nucleotidesCSW01_01630 and CSW01_01635 overlap by 4 nucleotides CSW01_01620: CSW01_01620 - phosphatidylserine synthase, at 328,451 to 329,791 _01620 CSW01_01625: CSW01_01625 - N-acetyltransferase, at 329,886 to 330,332 _01625 CSW01_01630: CSW01_01630 - UDP-N-acetylmuramate dehydrogenase, at 330,345 to 331,418 _01630 CSW01_01635: CSW01_01635 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 331,415 to 332,377 _01635 Position (kb) 330 331 332Strain fitness (log2 ratio) -1 0 1at 329.811 kb on - strandat 329.916 kb on + strandat 329.935 kb on - strand, within CSW01_01625at 329.938 kb on + strand, within CSW01_01625at 330.024 kb on + strand, within CSW01_01625at 330.032 kb on - strand, within CSW01_01625at 330.055 kb on + strand, within CSW01_01625at 330.108 kb on + strand, within CSW01_01625at 330.108 kb on + strand, within CSW01_01625at 330.116 kb on - strand, within CSW01_01625at 330.116 kb on - strand, within CSW01_01625at 330.130 kb on - strand, within CSW01_01625at 330.175 kb on - strand, within CSW01_01625at 330.210 kb on - strand, within CSW01_01625at 330.246 kb on - strand, within CSW01_01625at 330.246 kb on - strand, within CSW01_01625at 331.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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329,811 - -0.5
329,916 + -0.3
329,935 - CSW01_01625 0.11 -0.3
329,938 + CSW01_01625 0.12 -0.9
330,024 + CSW01_01625 0.31 -1.1
330,032 - CSW01_01625 0.33 +0.2
330,055 + CSW01_01625 0.38 -1.1
330,108 + CSW01_01625 0.50 -0.7
330,108 + CSW01_01625 0.50 -0.4
330,116 - CSW01_01625 0.51 -0.1
330,116 - CSW01_01625 0.51 +0.3
330,130 - CSW01_01625 0.55 -0.6
330,175 - CSW01_01625 0.65 +0.3
330,210 - CSW01_01625 0.72 +0.8
330,246 - CSW01_01625 0.81 +0.1
330,246 - CSW01_01625 0.81 +0.3
331,423 + -0.9

Or see this region's nucleotide sequence