Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01585 and CSW01_01590 are separated by 576 nucleotides CSW01_01590 and CSW01_01595 are separated by 53 nucleotides CSW01_01595 and CSW01_01600 are separated by 8 nucleotides CSW01_01600 and CSW01_01605 are separated by 280 nucleotides
CSW01_01585: CSW01_01585 - NAD(P)H-flavin reductase, at 321,591 to 322,301
_01585
CSW01_01590: CSW01_01590 - 16S ribosomal RNA, at 322,878 to 324,431
_01590
CSW01_01595: CSW01_01595 - tRNA-Ile, at 324,485 to 324,561
_01595
CSW01_01600: CSW01_01600 - tRNA-Ala, at 324,570 to 324,645
_01600
CSW01_01605: CSW01_01605 - 23S ribosomal RNA, at 324,926 to 327,841
_01605
Position (kb) 322
323
324
325 Strain fitness (log2 ratio) -1
0
1 at 321.881 kb on + strand, within CSW01_01585 at 321.892 kb on + strand, within CSW01_01585 at 321.947 kb on - strand, within CSW01_01585 at 321.983 kb on + strand, within CSW01_01585 at 321.993 kb on - strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.032 kb on + strand, within CSW01_01585 at 322.034 kb on + strand, within CSW01_01585 at 322.034 kb on + strand, within CSW01_01585 at 322.037 kb on - strand, within CSW01_01585 at 322.037 kb on - strand, within CSW01_01585 at 322.050 kb on - strand, within CSW01_01585 at 322.080 kb on + strand, within CSW01_01585 at 322.080 kb on + strand, within CSW01_01585 at 322.108 kb on - strand, within CSW01_01585 at 322.119 kb on - strand, within CSW01_01585 at 322.193 kb on + strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.215 kb on - strand, within CSW01_01585 at 322.284 kb on + strand at 322.292 kb on - strand at 322.301 kb on + strand at 322.308 kb on + strand at 322.308 kb on + strand at 322.338 kb on + strand at 322.376 kb on + strand at 322.384 kb on - strand at 322.501 kb on - strand at 322.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 321,881 + CSW01_01585 0.41 +0.5 321,892 + CSW01_01585 0.42 -0.5 321,947 - CSW01_01585 0.50 -1.2 321,983 + CSW01_01585 0.55 +0.1 321,993 - CSW01_01585 0.57 -0.7 322,007 + CSW01_01585 0.59 -0.6 322,007 + CSW01_01585 0.59 +0.3 322,007 + CSW01_01585 0.59 -0.5 322,007 + CSW01_01585 0.59 -0.5 322,015 - CSW01_01585 0.60 -0.3 322,015 - CSW01_01585 0.60 -0.6 322,015 - CSW01_01585 0.60 -0.1 322,015 - CSW01_01585 0.60 +0.6 322,015 - CSW01_01585 0.60 -1.4 322,015 - CSW01_01585 0.60 -0.7 322,032 + CSW01_01585 0.62 +0.3 322,034 + CSW01_01585 0.62 -0.6 322,034 + CSW01_01585 0.62 -0.4 322,037 - CSW01_01585 0.63 -0.0 322,037 - CSW01_01585 0.63 -0.1 322,050 - CSW01_01585 0.65 -0.8 322,080 + CSW01_01585 0.69 +0.6 322,080 + CSW01_01585 0.69 -0.7 322,108 - CSW01_01585 0.73 +0.4 322,119 - CSW01_01585 0.74 -0.1 322,193 + CSW01_01585 0.85 +0.1 322,201 - CSW01_01585 0.86 -0.2 322,201 - CSW01_01585 0.86 -0.2 322,201 - CSW01_01585 0.86 -0.2 322,201 - CSW01_01585 0.86 -0.9 322,215 - CSW01_01585 0.88 -0.3 322,284 + -0.3 322,292 - +0.6 322,301 + +0.8 322,308 + -1.1 322,308 + -0.1 322,338 + -0.2 322,376 + -0.2 322,384 - -0.5 322,501 - +0.3 322,686 - +0.4
Or see this region's nucleotide sequence