Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01575

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01570 and CSW01_01575 are separated by 81 nucleotidesCSW01_01575 and CSW01_01580 overlap by 4 nucleotidesCSW01_01580 and CSW01_01585 are separated by 15 nucleotides CSW01_01570: CSW01_01570 - hypothetical protein, at 318,394 to 319,386 _01570 CSW01_01575: CSW01_01575 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 319,468 to 321,309 _01575 CSW01_01580: CSW01_01580 - ferredoxin, at 321,306 to 321,575 _01580 CSW01_01585: CSW01_01585 - NAD(P)H-flavin reductase, at 321,591 to 322,301 _01585 Position (kb) 319 320 321 322Strain fitness (log2 ratio) -2 -1 0 1at 318.470 kb on + strandat 318.478 kb on - strandat 318.479 kb on + strandat 318.479 kb on + strandat 318.480 kb on + strandat 318.486 kb on + strandat 318.494 kb on - strand, within CSW01_01570at 318.509 kb on - strand, within CSW01_01570at 318.536 kb on - strand, within CSW01_01570at 318.549 kb on + strand, within CSW01_01570at 318.582 kb on + strand, within CSW01_01570at 318.615 kb on - strand, within CSW01_01570at 318.640 kb on - strand, within CSW01_01570at 318.661 kb on - strand, within CSW01_01570at 318.675 kb on + strand, within CSW01_01570at 318.683 kb on - strand, within CSW01_01570at 318.683 kb on - strand, within CSW01_01570at 318.734 kb on + strand, within CSW01_01570at 318.794 kb on - strand, within CSW01_01570at 318.852 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.930 kb on - strand, within CSW01_01570at 318.954 kb on - strand, within CSW01_01570at 318.969 kb on + strand, within CSW01_01570at 318.977 kb on - strand, within CSW01_01570at 318.999 kb on + strand, within CSW01_01570at 319.036 kb on + strand, within CSW01_01570at 319.044 kb on - strand, within CSW01_01570at 319.045 kb on - strand, within CSW01_01570at 319.130 kb on + strand, within CSW01_01570at 319.172 kb on + strand, within CSW01_01570at 319.180 kb on - strand, within CSW01_01570at 319.258 kb on - strand, within CSW01_01570at 319.278 kb on + strand, within CSW01_01570at 319.332 kb on - strandat 319.396 kb on - strandat 319.412 kb on + strandat 319.420 kb on - strandat 319.432 kb on - strandat 321.300 kb on - strandat 321.302 kb on - strandat 321.308 kb on + strandat 321.310 kb on + strandat 321.316 kb on - strandat 321.316 kb on - strandat 321.316 kb on - strandat 321.323 kb on + strandat 321.369 kb on - strand, within CSW01_01580at 321.433 kb on + strand, within CSW01_01580at 321.452 kb on - strand, within CSW01_01580at 321.485 kb on + strand, within CSW01_01580at 321.528 kb on + strand, within CSW01_01580at 321.528 kb on + strand, within CSW01_01580at 321.578 kb on - strandat 321.578 kb on - strandat 321.623 kb on + strandat 321.626 kb on - strandat 321.676 kb on - strand, within CSW01_01585at 321.700 kb on - strand, within CSW01_01585at 321.700 kb on - strand, within CSW01_01585at 321.779 kb on + strand, within CSW01_01585at 321.805 kb on + strand, within CSW01_01585at 321.813 kb on - strand, within CSW01_01585at 321.881 kb on + strand, within CSW01_01585at 321.892 kb on + strand, within CSW01_01585at 321.947 kb on - strand, within CSW01_01585at 321.983 kb on + strand, within CSW01_01585at 321.993 kb on - strand, within CSW01_01585at 322.007 kb on + strand, within CSW01_01585at 322.007 kb on + strand, within CSW01_01585at 322.007 kb on + strand, within CSW01_01585at 322.007 kb on + strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.015 kb on - strand, within CSW01_01585at 322.032 kb on + strand, within CSW01_01585at 322.034 kb on + strand, within CSW01_01585at 322.034 kb on + strand, within CSW01_01585at 322.037 kb on - strand, within CSW01_01585at 322.037 kb on - strand, within CSW01_01585at 322.050 kb on - strand, within CSW01_01585at 322.080 kb on + strand, within CSW01_01585at 322.080 kb on + strand, within CSW01_01585at 322.108 kb on - strand, within CSW01_01585at 322.119 kb on - strand, within CSW01_01585at 322.193 kb on + strand, within CSW01_01585at 322.201 kb on - strand, within CSW01_01585at 322.201 kb on - strand, within CSW01_01585at 322.201 kb on - strand, within CSW01_01585at 322.201 kb on - strand, within CSW01_01585at 322.215 kb on - strand, within CSW01_01585at 322.284 kb on + strandat 322.292 kb on - strandat 322.301 kb on + strandat 322.308 kb on + strandat 322.308 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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318,470 + +0.0
318,478 - +0.9
318,479 + -0.3
318,479 + +0.1
318,480 + -0.4
318,486 + +0.6
318,494 - CSW01_01570 0.10 -0.2
318,509 - CSW01_01570 0.12 -2.6
318,536 - CSW01_01570 0.14 +0.1
318,549 + CSW01_01570 0.16 +0.4
318,582 + CSW01_01570 0.19 -0.3
318,615 - CSW01_01570 0.22 -0.3
318,640 - CSW01_01570 0.25 -0.9
318,661 - CSW01_01570 0.27 -0.3
318,675 + CSW01_01570 0.28 +0.2
318,683 - CSW01_01570 0.29 +0.1
318,683 - CSW01_01570 0.29 +0.5
318,734 + CSW01_01570 0.34 -0.1
318,794 - CSW01_01570 0.40 -0.0
318,852 + CSW01_01570 0.46 -1.0
318,922 + CSW01_01570 0.53 +0.5
318,922 + CSW01_01570 0.53 -1.6
318,922 + CSW01_01570 0.53 +0.3
318,930 - CSW01_01570 0.54 -1.0
318,954 - CSW01_01570 0.56 +0.1
318,969 + CSW01_01570 0.58 +0.3
318,977 - CSW01_01570 0.59 +0.1
318,999 + CSW01_01570 0.61 -1.0
319,036 + CSW01_01570 0.65 -0.1
319,044 - CSW01_01570 0.65 +0.0
319,045 - CSW01_01570 0.66 -0.7
319,130 + CSW01_01570 0.74 -0.0
319,172 + CSW01_01570 0.78 +0.1
319,180 - CSW01_01570 0.79 -0.0
319,258 - CSW01_01570 0.87 +0.4
319,278 + CSW01_01570 0.89 -0.1
319,332 - -1.6
319,396 - +0.1
319,412 + -0.8
319,420 - +0.3
319,432 - -0.0
321,300 - +0.4
321,302 - -0.1
321,308 + -1.4
321,310 + +0.4
321,316 - +0.7
321,316 - +0.0
321,316 - -0.0
321,323 + -0.1
321,369 - CSW01_01580 0.23 -0.1
321,433 + CSW01_01580 0.47 -0.4
321,452 - CSW01_01580 0.54 +0.4
321,485 + CSW01_01580 0.66 +0.0
321,528 + CSW01_01580 0.82 +0.3
321,528 + CSW01_01580 0.82 +0.2
321,578 - -0.8
321,578 - +0.0
321,623 + +0.7
321,626 - -1.0
321,676 - CSW01_01585 0.12 -0.9
321,700 - CSW01_01585 0.15 -0.7
321,700 - CSW01_01585 0.15 +0.1
321,779 + CSW01_01585 0.26 -0.1
321,805 + CSW01_01585 0.30 -0.5
321,813 - CSW01_01585 0.31 -0.7
321,881 + CSW01_01585 0.41 +0.5
321,892 + CSW01_01585 0.42 -0.5
321,947 - CSW01_01585 0.50 -1.2
321,983 + CSW01_01585 0.55 +0.1
321,993 - CSW01_01585 0.57 -0.7
322,007 + CSW01_01585 0.59 -0.6
322,007 + CSW01_01585 0.59 +0.3
322,007 + CSW01_01585 0.59 -0.5
322,007 + CSW01_01585 0.59 -0.5
322,015 - CSW01_01585 0.60 -0.3
322,015 - CSW01_01585 0.60 -0.6
322,015 - CSW01_01585 0.60 -0.1
322,015 - CSW01_01585 0.60 +0.6
322,015 - CSW01_01585 0.60 -1.4
322,015 - CSW01_01585 0.60 -0.7
322,032 + CSW01_01585 0.62 +0.3
322,034 + CSW01_01585 0.62 -0.6
322,034 + CSW01_01585 0.62 -0.4
322,037 - CSW01_01585 0.63 -0.0
322,037 - CSW01_01585 0.63 -0.1
322,050 - CSW01_01585 0.65 -0.8
322,080 + CSW01_01585 0.69 +0.6
322,080 + CSW01_01585 0.69 -0.7
322,108 - CSW01_01585 0.73 +0.4
322,119 - CSW01_01585 0.74 -0.1
322,193 + CSW01_01585 0.85 +0.1
322,201 - CSW01_01585 0.86 -0.2
322,201 - CSW01_01585 0.86 -0.2
322,201 - CSW01_01585 0.86 -0.2
322,201 - CSW01_01585 0.86 -0.9
322,215 - CSW01_01585 0.88 -0.3
322,284 + -0.3
322,292 - +0.6
322,301 + +0.8
322,308 + -1.1
322,308 + -0.1

Or see this region's nucleotide sequence