Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01565

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01555 and CSW01_01560 are separated by 111 nucleotidesCSW01_01560 and CSW01_01565 are separated by 197 nucleotidesCSW01_01565 and CSW01_01570 are separated by 98 nucleotides CSW01_01555: CSW01_01555 - ATP-dependent RNA helicase RhlB, at 315,084 to 316,400 _01555 CSW01_01560: CSW01_01560 - thioredoxin TrxA, at 316,512 to 316,838 _01560 CSW01_01565: CSW01_01565 - transcription termination factor Rho, at 317,036 to 318,295 _01565 CSW01_01570: CSW01_01570 - hypothetical protein, at 318,394 to 319,386 _01570 Position (kb) 317 318 319Strain fitness (log2 ratio) -2 -1 0 1at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.072 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.245 kb on - strand, within CSW01_01555at 316.247 kb on + strand, within CSW01_01555at 316.255 kb on - strand, within CSW01_01555at 316.257 kb on + strand, within CSW01_01555at 316.265 kb on - strand, within CSW01_01555at 316.267 kb on - strand, within CSW01_01555at 316.269 kb on + strandat 316.274 kb on + strandat 316.296 kb on + strandat 316.377 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.475 kb on + strandat 316.475 kb on + strandat 316.483 kb on - strandat 316.610 kb on - strand, within CSW01_01560at 316.832 kb on + strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.855 kb on + strandat 316.855 kb on + strandat 316.856 kb on - strandat 316.952 kb on + strandat 318.318 kb on + strandat 318.359 kb on + strandat 318.368 kb on + strandat 318.372 kb on - strandat 318.376 kb on - strandat 318.376 kb on - strandat 318.470 kb on + strandat 318.478 kb on - strandat 318.479 kb on + strandat 318.479 kb on + strandat 318.480 kb on + strandat 318.486 kb on + strandat 318.494 kb on - strand, within CSW01_01570at 318.509 kb on - strand, within CSW01_01570at 318.536 kb on - strand, within CSW01_01570at 318.549 kb on + strand, within CSW01_01570at 318.582 kb on + strand, within CSW01_01570at 318.615 kb on - strand, within CSW01_01570at 318.640 kb on - strand, within CSW01_01570at 318.661 kb on - strand, within CSW01_01570at 318.675 kb on + strand, within CSW01_01570at 318.683 kb on - strand, within CSW01_01570at 318.683 kb on - strand, within CSW01_01570at 318.734 kb on + strand, within CSW01_01570at 318.794 kb on - strand, within CSW01_01570at 318.852 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.922 kb on + strand, within CSW01_01570at 318.930 kb on - strand, within CSW01_01570at 318.954 kb on - strand, within CSW01_01570at 318.969 kb on + strand, within CSW01_01570at 318.977 kb on - strand, within CSW01_01570at 318.999 kb on + strand, within CSW01_01570at 319.036 kb on + strand, within CSW01_01570at 319.044 kb on - strand, within CSW01_01570at 319.045 kb on - strand, within CSW01_01570at 319.130 kb on + strand, within CSW01_01570at 319.172 kb on + strand, within CSW01_01570at 319.180 kb on - strand, within CSW01_01570at 319.258 kb on - strand, within CSW01_01570at 319.278 kb on + strand, within CSW01_01570

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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316,055 - CSW01_01555 0.74 -0.4
316,055 - CSW01_01555 0.74 -0.9
316,055 - CSW01_01555 0.74 -0.8
316,055 - CSW01_01555 0.74 -0.3
316,064 + CSW01_01555 0.74 -0.2
316,064 + CSW01_01555 0.74 -1.1
316,072 - CSW01_01555 0.75 -0.2
316,172 - CSW01_01555 0.83 -0.2
316,172 - CSW01_01555 0.83 -1.3
316,172 - CSW01_01555 0.83 +0.1
316,245 - CSW01_01555 0.88 -0.8
316,247 + CSW01_01555 0.88 -1.7
316,255 - CSW01_01555 0.89 -1.3
316,257 + CSW01_01555 0.89 +0.4
316,265 - CSW01_01555 0.90 +0.3
316,267 - CSW01_01555 0.90 -1.5
316,269 + -0.9
316,274 + +0.1
316,296 + -0.2
316,377 - -0.4
316,379 - -0.8
316,379 - -0.7
316,379 - -0.1
316,475 + -0.4
316,475 + -0.4
316,483 - -0.1
316,610 - CSW01_01560 0.30 -0.1
316,832 + +0.6
316,840 - -0.6
316,840 - -0.8
316,840 - -0.9
316,855 + -0.5
316,855 + +0.3
316,856 - -0.0
316,952 + +0.9
318,318 + -0.8
318,359 + +1.7
318,368 + -0.6
318,372 - +0.7
318,376 - +0.3
318,376 - -0.3
318,470 + +0.0
318,478 - +0.9
318,479 + -0.3
318,479 + +0.1
318,480 + -0.4
318,486 + +0.6
318,494 - CSW01_01570 0.10 -0.2
318,509 - CSW01_01570 0.12 -2.6
318,536 - CSW01_01570 0.14 +0.1
318,549 + CSW01_01570 0.16 +0.4
318,582 + CSW01_01570 0.19 -0.3
318,615 - CSW01_01570 0.22 -0.3
318,640 - CSW01_01570 0.25 -0.9
318,661 - CSW01_01570 0.27 -0.3
318,675 + CSW01_01570 0.28 +0.2
318,683 - CSW01_01570 0.29 +0.1
318,683 - CSW01_01570 0.29 +0.5
318,734 + CSW01_01570 0.34 -0.1
318,794 - CSW01_01570 0.40 -0.0
318,852 + CSW01_01570 0.46 -1.0
318,922 + CSW01_01570 0.53 +0.5
318,922 + CSW01_01570 0.53 -1.6
318,922 + CSW01_01570 0.53 +0.3
318,930 - CSW01_01570 0.54 -1.0
318,954 - CSW01_01570 0.56 +0.1
318,969 + CSW01_01570 0.58 +0.3
318,977 - CSW01_01570 0.59 +0.1
318,999 + CSW01_01570 0.61 -1.0
319,036 + CSW01_01570 0.65 -0.1
319,044 - CSW01_01570 0.65 +0.0
319,045 - CSW01_01570 0.66 -0.7
319,130 + CSW01_01570 0.74 -0.0
319,172 + CSW01_01570 0.78 +0.1
319,180 - CSW01_01570 0.79 -0.0
319,258 - CSW01_01570 0.87 +0.4
319,278 + CSW01_01570 0.89 -0.1

Or see this region's nucleotide sequence