Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01555 and CSW01_01560 are separated by 111 nucleotides CSW01_01560 and CSW01_01565 are separated by 197 nucleotides
CSW01_01555: CSW01_01555 - ATP-dependent RNA helicase RhlB, at 315,084 to 316,400
_01555
CSW01_01560: CSW01_01560 - thioredoxin TrxA, at 316,512 to 316,838
_01560
CSW01_01565: CSW01_01565 - transcription termination factor Rho, at 317,036 to 318,295
_01565
Position (kb) 316
317 Strain fitness (log2 ratio) -1
0
1 at 315.535 kb on + strand, within CSW01_01555 at 315.538 kb on + strand, within CSW01_01555 at 315.585 kb on + strand, within CSW01_01555 at 315.588 kb on - strand, within CSW01_01555 at 315.588 kb on - strand, within CSW01_01555 at 315.642 kb on - strand, within CSW01_01555 at 315.655 kb on + strand, within CSW01_01555 at 315.655 kb on + strand, within CSW01_01555 at 315.688 kb on + strand, within CSW01_01555 at 315.688 kb on + strand, within CSW01_01555 at 315.688 kb on + strand, within CSW01_01555 at 315.696 kb on - strand, within CSW01_01555 at 315.696 kb on - strand, within CSW01_01555 at 315.696 kb on - strand, within CSW01_01555 at 315.733 kb on + strand, within CSW01_01555 at 315.741 kb on - strand, within CSW01_01555 at 315.741 kb on - strand, within CSW01_01555 at 315.741 kb on - strand, within CSW01_01555 at 315.741 kb on - strand, within CSW01_01555 at 315.757 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.790 kb on + strand, within CSW01_01555 at 315.792 kb on + strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.798 kb on - strand, within CSW01_01555 at 315.800 kb on + strand, within CSW01_01555 at 315.805 kb on + strand, within CSW01_01555 at 315.805 kb on + strand, within CSW01_01555 at 315.805 kb on + strand, within CSW01_01555 at 315.919 kb on + strand, within CSW01_01555 at 315.919 kb on + strand, within CSW01_01555 at 315.927 kb on - strand, within CSW01_01555 at 315.927 kb on - strand, within CSW01_01555 at 316.055 kb on - strand, within CSW01_01555 at 316.055 kb on - strand, within CSW01_01555 at 316.055 kb on - strand, within CSW01_01555 at 316.055 kb on - strand, within CSW01_01555 at 316.064 kb on + strand, within CSW01_01555 at 316.064 kb on + strand, within CSW01_01555 at 316.072 kb on - strand, within CSW01_01555 at 316.172 kb on - strand, within CSW01_01555 at 316.172 kb on - strand, within CSW01_01555 at 316.172 kb on - strand, within CSW01_01555 at 316.245 kb on - strand, within CSW01_01555 at 316.247 kb on + strand, within CSW01_01555 at 316.255 kb on - strand, within CSW01_01555 at 316.257 kb on + strand, within CSW01_01555 at 316.265 kb on - strand, within CSW01_01555 at 316.267 kb on - strand, within CSW01_01555 at 316.269 kb on + strand at 316.274 kb on + strand at 316.296 kb on + strand at 316.377 kb on - strand at 316.379 kb on - strand at 316.379 kb on - strand at 316.379 kb on - strand at 316.475 kb on + strand at 316.475 kb on + strand at 316.483 kb on - strand at 316.610 kb on - strand, within CSW01_01560 at 316.832 kb on + strand at 316.840 kb on - strand at 316.840 kb on - strand at 316.840 kb on - strand at 316.855 kb on + strand at 316.855 kb on + strand at 316.856 kb on - strand at 316.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 315,535 + CSW01_01555 0.34 -0.4 315,538 + CSW01_01555 0.34 -0.9 315,585 + CSW01_01555 0.38 -0.6 315,588 - CSW01_01555 0.38 -0.4 315,588 - CSW01_01555 0.38 -0.5 315,642 - CSW01_01555 0.42 -0.4 315,655 + CSW01_01555 0.43 -0.4 315,655 + CSW01_01555 0.43 -0.7 315,688 + CSW01_01555 0.46 -1.7 315,688 + CSW01_01555 0.46 -0.8 315,688 + CSW01_01555 0.46 -0.2 315,696 - CSW01_01555 0.46 -0.6 315,696 - CSW01_01555 0.46 +0.6 315,696 - CSW01_01555 0.46 -1.7 315,733 + CSW01_01555 0.49 +0.3 315,741 - CSW01_01555 0.50 -0.2 315,741 - CSW01_01555 0.50 -1.6 315,741 - CSW01_01555 0.50 -0.5 315,741 - CSW01_01555 0.50 -0.6 315,757 + CSW01_01555 0.51 -0.3 315,790 + CSW01_01555 0.54 +1.2 315,790 + CSW01_01555 0.54 -0.4 315,790 + CSW01_01555 0.54 -0.1 315,790 + CSW01_01555 0.54 -0.4 315,790 + CSW01_01555 0.54 -0.5 315,790 + CSW01_01555 0.54 -0.2 315,790 + CSW01_01555 0.54 -0.1 315,792 + CSW01_01555 0.54 -0.6 315,798 - CSW01_01555 0.54 +0.1 315,798 - CSW01_01555 0.54 +1.3 315,798 - CSW01_01555 0.54 -0.3 315,798 - CSW01_01555 0.54 -1.4 315,798 - CSW01_01555 0.54 -0.7 315,798 - CSW01_01555 0.54 +0.2 315,798 - CSW01_01555 0.54 -0.9 315,798 - CSW01_01555 0.54 +0.0 315,798 - CSW01_01555 0.54 -1.2 315,798 - CSW01_01555 0.54 -0.6 315,798 - CSW01_01555 0.54 +0.5 315,800 + CSW01_01555 0.54 +0.1 315,805 + CSW01_01555 0.55 -0.7 315,805 + CSW01_01555 0.55 -0.1 315,805 + CSW01_01555 0.55 -1.6 315,919 + CSW01_01555 0.63 -1.3 315,919 + CSW01_01555 0.63 +0.6 315,927 - CSW01_01555 0.64 -0.6 315,927 - CSW01_01555 0.64 +0.4 316,055 - CSW01_01555 0.74 -0.4 316,055 - CSW01_01555 0.74 -0.9 316,055 - CSW01_01555 0.74 -0.8 316,055 - CSW01_01555 0.74 -0.3 316,064 + CSW01_01555 0.74 -0.2 316,064 + CSW01_01555 0.74 -1.1 316,072 - CSW01_01555 0.75 -0.2 316,172 - CSW01_01555 0.83 -0.2 316,172 - CSW01_01555 0.83 -1.3 316,172 - CSW01_01555 0.83 +0.1 316,245 - CSW01_01555 0.88 -0.8 316,247 + CSW01_01555 0.88 -1.7 316,255 - CSW01_01555 0.89 -1.3 316,257 + CSW01_01555 0.89 +0.4 316,265 - CSW01_01555 0.90 +0.3 316,267 - CSW01_01555 0.90 -1.5 316,269 + -0.9 316,274 + +0.1 316,296 + -0.2 316,377 - -0.4 316,379 - -0.8 316,379 - -0.7 316,379 - -0.1 316,475 + -0.4 316,475 + -0.4 316,483 - -0.1 316,610 - CSW01_01560 0.30 -0.1 316,832 + +0.6 316,840 - -0.6 316,840 - -0.8 316,840 - -0.9 316,855 + -0.5 316,855 + +0.3 316,856 - -0.0 316,952 + +0.9
Or see this region's nucleotide sequence