Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01550

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01545 and CSW01_01550 are separated by 122 nucleotidesCSW01_01550 and CSW01_01555 are separated by 7 nucleotides CSW01_01545: CSW01_01545 - hybrid sensor histidine kinase/response regulator, at 310,017 to 313,460 _01545 CSW01_01550: CSW01_01550 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 313,583 to 315,076 _01550 CSW01_01555: CSW01_01555 - ATP-dependent RNA helicase RhlB, at 315,084 to 316,400 _01555 Position (kb) 313 314 315 316Strain fitness (log2 ratio) -2 -1 0 1at 312.598 kb on + strand, within CSW01_01545at 312.598 kb on + strand, within CSW01_01545at 312.606 kb on - strand, within CSW01_01545at 312.606 kb on - strand, within CSW01_01545at 312.606 kb on - strand, within CSW01_01545at 312.634 kb on - strand, within CSW01_01545at 312.674 kb on - strand, within CSW01_01545at 312.684 kb on - strand, within CSW01_01545at 312.760 kb on + strand, within CSW01_01545at 312.760 kb on + strand, within CSW01_01545at 312.794 kb on + strand, within CSW01_01545at 312.816 kb on + strand, within CSW01_01545at 312.884 kb on + strand, within CSW01_01545at 312.897 kb on + strand, within CSW01_01545at 312.902 kb on + strand, within CSW01_01545at 312.905 kb on - strand, within CSW01_01545at 312.907 kb on + strand, within CSW01_01545at 312.910 kb on - strand, within CSW01_01545at 312.910 kb on - strand, within CSW01_01545at 312.918 kb on + strand, within CSW01_01545at 312.918 kb on + strand, within CSW01_01545at 312.918 kb on + strand, within CSW01_01545at 312.918 kb on + strand, within CSW01_01545at 312.919 kb on + strand, within CSW01_01545at 312.919 kb on + strand, within CSW01_01545at 312.925 kb on + strand, within CSW01_01545at 312.925 kb on + strand, within CSW01_01545at 312.926 kb on - strand, within CSW01_01545at 312.926 kb on - strand, within CSW01_01545at 312.954 kb on + strand, within CSW01_01545at 312.956 kb on - strand, within CSW01_01545at 312.960 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 312.996 kb on + strand, within CSW01_01545at 313.004 kb on - strand, within CSW01_01545at 313.004 kb on - strand, within CSW01_01545at 313.004 kb on - strand, within CSW01_01545at 313.004 kb on - strand, within CSW01_01545at 313.004 kb on - strand, within CSW01_01545at 313.006 kb on + strand, within CSW01_01545at 313.020 kb on + strand, within CSW01_01545at 313.039 kb on - strand, within CSW01_01545at 313.056 kb on + strand, within CSW01_01545at 313.081 kb on - strand, within CSW01_01545at 313.087 kb on + strand, within CSW01_01545at 313.087 kb on + strand, within CSW01_01545at 313.087 kb on + strand, within CSW01_01545at 313.087 kb on + strand, within CSW01_01545at 313.095 kb on - strand, within CSW01_01545at 313.095 kb on - strand, within CSW01_01545at 313.095 kb on - strand, within CSW01_01545at 313.095 kb on - strand, within CSW01_01545at 313.174 kb on - strandat 313.211 kb on + strandat 313.226 kb on - strandat 313.286 kb on + strandat 313.288 kb on - strandat 313.294 kb on - strandat 313.304 kb on - strandat 313.386 kb on - strandat 313.386 kb on - strandat 313.393 kb on + strandat 313.454 kb on + strandat 313.454 kb on + strandat 313.454 kb on + strandat 313.462 kb on - strandat 313.462 kb on - strandat 313.462 kb on - strandat 313.462 kb on - strandat 313.472 kb on + strandat 313.472 kb on + strandat 313.472 kb on + strandat 313.480 kb on - strandat 313.518 kb on + strandat 313.543 kb on + strandat 313.557 kb on + strandat 313.564 kb on + strandat 313.565 kb on - strandat 313.565 kb on - strandat 313.570 kb on - strandat 313.572 kb on - strandat 313.581 kb on + strandat 313.600 kb on + strandat 313.640 kb on + strandat 313.640 kb on + strandat 313.640 kb on + strandat 313.640 kb on + strandat 313.648 kb on + strandat 313.648 kb on - strandat 313.648 kb on - strandat 313.675 kb on + strandat 313.683 kb on - strandat 313.690 kb on + strandat 313.746 kb on + strand, within CSW01_01550at 313.790 kb on - strand, within CSW01_01550at 313.841 kb on + strand, within CSW01_01550at 313.897 kb on + strand, within CSW01_01550at 313.905 kb on - strand, within CSW01_01550at 313.912 kb on + strand, within CSW01_01550at 313.935 kb on + strand, within CSW01_01550at 313.938 kb on - strand, within CSW01_01550at 314.051 kb on - strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.117 kb on + strand, within CSW01_01550at 314.125 kb on - strand, within CSW01_01550at 314.125 kb on - strand, within CSW01_01550at 314.136 kb on - strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.165 kb on + strand, within CSW01_01550at 314.173 kb on - strand, within CSW01_01550at 314.190 kb on + strand, within CSW01_01550at 314.191 kb on - strand, within CSW01_01550at 314.205 kb on + strand, within CSW01_01550at 314.296 kb on + strand, within CSW01_01550at 314.304 kb on - strand, within CSW01_01550at 314.361 kb on - strand, within CSW01_01550at 314.372 kb on - strand, within CSW01_01550at 314.390 kb on - strand, within CSW01_01550at 314.436 kb on - strand, within CSW01_01550at 314.440 kb on + strand, within CSW01_01550at 314.452 kb on + strand, within CSW01_01550at 314.460 kb on - strand, within CSW01_01550at 314.472 kb on - strand, within CSW01_01550at 314.479 kb on - strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.597 kb on + strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.605 kb on - strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.675 kb on + strand, within CSW01_01550at 314.682 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.683 kb on - strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.685 kb on + strand, within CSW01_01550at 314.693 kb on - strand, within CSW01_01550at 314.711 kb on - strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.812 kb on + strand, within CSW01_01550at 314.820 kb on - strand, within CSW01_01550at 314.883 kb on - strand, within CSW01_01550at 314.912 kb on + strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.913 kb on - strand, within CSW01_01550at 314.920 kb on - strand, within CSW01_01550at 314.924 kb on + strand, within CSW01_01550at 314.929 kb on + strandat 314.929 kb on + strandat 314.929 kb on + strandat 314.929 kb on + strandat 314.959 kb on - strandat 315.013 kb on + strandat 315.014 kb on - strandat 315.045 kb on + strandat 315.055 kb on - strandat 315.123 kb on + strandat 315.183 kb on + strandat 315.183 kb on + strandat 315.191 kb on - strandat 315.191 kb on - strandat 315.204 kb on - strandat 315.231 kb on + strand, within CSW01_01555at 315.236 kb on + strand, within CSW01_01555at 315.246 kb on - strand, within CSW01_01555at 315.259 kb on - strand, within CSW01_01555at 315.373 kb on - strand, within CSW01_01555at 315.382 kb on - strand, within CSW01_01555at 315.460 kb on - strand, within CSW01_01555at 315.535 kb on + strand, within CSW01_01555at 315.538 kb on + strand, within CSW01_01555at 315.585 kb on + strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.642 kb on - strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.733 kb on + strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.757 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.792 kb on + strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.800 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.072 kb on - strand, within CSW01_01555

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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312,598 + CSW01_01545 0.75 -0.1
312,598 + CSW01_01545 0.75 +0.6
312,606 - CSW01_01545 0.75 -0.0
312,606 - CSW01_01545 0.75 -0.3
312,606 - CSW01_01545 0.75 -0.2
312,634 - CSW01_01545 0.76 +0.0
312,674 - CSW01_01545 0.77 +0.1
312,684 - CSW01_01545 0.77 -0.1
312,760 + CSW01_01545 0.80 +1.0
312,760 + CSW01_01545 0.80 +0.1
312,794 + CSW01_01545 0.81 -0.5
312,816 + CSW01_01545 0.81 +0.3
312,884 + CSW01_01545 0.83 +0.2
312,897 + CSW01_01545 0.84 +0.0
312,902 + CSW01_01545 0.84 +0.2
312,905 - CSW01_01545 0.84 +0.3
312,907 + CSW01_01545 0.84 -0.3
312,910 - CSW01_01545 0.84 +0.1
312,910 - CSW01_01545 0.84 +0.2
312,918 + CSW01_01545 0.84 -0.3
312,918 + CSW01_01545 0.84 +1.2
312,918 + CSW01_01545 0.84 +0.1
312,918 + CSW01_01545 0.84 +0.5
312,919 + CSW01_01545 0.84 +1.4
312,919 + CSW01_01545 0.84 -0.3
312,925 + CSW01_01545 0.84 +0.4
312,925 + CSW01_01545 0.84 -0.1
312,926 - CSW01_01545 0.84 +0.3
312,926 - CSW01_01545 0.84 -0.2
312,954 + CSW01_01545 0.85 +0.4
312,956 - CSW01_01545 0.85 +0.4
312,960 + CSW01_01545 0.85 +0.8
312,996 + CSW01_01545 0.86 +0.0
312,996 + CSW01_01545 0.86 +0.1
312,996 + CSW01_01545 0.86 -0.8
312,996 + CSW01_01545 0.86 -0.6
312,996 + CSW01_01545 0.86 +0.2
312,996 + CSW01_01545 0.86 +0.4
312,996 + CSW01_01545 0.86 +0.5
313,004 - CSW01_01545 0.87 +0.3
313,004 - CSW01_01545 0.87 +0.1
313,004 - CSW01_01545 0.87 -0.3
313,004 - CSW01_01545 0.87 +0.0
313,004 - CSW01_01545 0.87 +0.3
313,006 + CSW01_01545 0.87 -1.3
313,020 + CSW01_01545 0.87 -0.1
313,039 - CSW01_01545 0.88 -0.2
313,056 + CSW01_01545 0.88 -0.1
313,081 - CSW01_01545 0.89 -0.2
313,087 + CSW01_01545 0.89 +0.5
313,087 + CSW01_01545 0.89 -0.1
313,087 + CSW01_01545 0.89 +0.2
313,087 + CSW01_01545 0.89 -0.4
313,095 - CSW01_01545 0.89 -0.2
313,095 - CSW01_01545 0.89 -0.7
313,095 - CSW01_01545 0.89 -0.7
313,095 - CSW01_01545 0.89 -0.1
313,174 - +0.7
313,211 + +0.1
313,226 - -0.4
313,286 + +0.9
313,288 - -0.0
313,294 - -0.2
313,304 - +0.6
313,386 - -0.6
313,386 - -0.3
313,393 + -0.1
313,454 + +0.2
313,454 + -0.2
313,454 + +0.1
313,462 - -0.6
313,462 - +0.2
313,462 - +0.3
313,462 - -0.6
313,472 + -0.4
313,472 + +0.5
313,472 + +0.1
313,480 - +0.8
313,518 + -0.4
313,543 + -0.5
313,557 + +1.2
313,564 + -0.5
313,565 - +0.2
313,565 - -0.8
313,570 - -0.3
313,572 - +0.2
313,581 + -0.6
313,600 + -1.4
313,640 + -0.4
313,640 + -0.6
313,640 + -0.9
313,640 + -1.0
313,648 + +0.0
313,648 - -0.5
313,648 - -0.1
313,675 + -0.8
313,683 - -0.7
313,690 + +0.8
313,746 + CSW01_01550 0.11 -0.9
313,790 - CSW01_01550 0.14 -0.4
313,841 + CSW01_01550 0.17 -0.0
313,897 + CSW01_01550 0.21 -0.3
313,905 - CSW01_01550 0.22 -1.6
313,912 + CSW01_01550 0.22 -0.4
313,935 + CSW01_01550 0.24 +0.7
313,938 - CSW01_01550 0.24 +0.1
314,051 - CSW01_01550 0.31 -0.8
314,117 + CSW01_01550 0.36 -1.0
314,117 + CSW01_01550 0.36 -0.8
314,117 + CSW01_01550 0.36 -0.6
314,117 + CSW01_01550 0.36 +0.7
314,117 + CSW01_01550 0.36 -0.3
314,125 - CSW01_01550 0.36 -0.1
314,125 - CSW01_01550 0.36 -0.6
314,136 - CSW01_01550 0.37 -0.0
314,165 + CSW01_01550 0.39 -0.3
314,165 + CSW01_01550 0.39 -0.8
314,165 + CSW01_01550 0.39 -0.9
314,173 - CSW01_01550 0.39 +0.1
314,190 + CSW01_01550 0.41 -0.5
314,191 - CSW01_01550 0.41 -0.8
314,205 + CSW01_01550 0.42 -0.9
314,296 + CSW01_01550 0.48 +0.0
314,304 - CSW01_01550 0.48 +0.1
314,361 - CSW01_01550 0.52 +0.1
314,372 - CSW01_01550 0.53 +0.2
314,390 - CSW01_01550 0.54 -0.5
314,436 - CSW01_01550 0.57 -0.8
314,440 + CSW01_01550 0.57 -0.9
314,452 + CSW01_01550 0.58 +0.1
314,460 - CSW01_01550 0.59 -0.6
314,472 - CSW01_01550 0.60 -1.1
314,479 - CSW01_01550 0.60 +0.5
314,597 + CSW01_01550 0.68 +0.4
314,597 + CSW01_01550 0.68 -0.7
314,597 + CSW01_01550 0.68 -0.2
314,597 + CSW01_01550 0.68 -0.3
314,597 + CSW01_01550 0.68 -0.1
314,605 - CSW01_01550 0.68 -0.5
314,605 - CSW01_01550 0.68 -0.8
314,605 - CSW01_01550 0.68 -0.8
314,675 + CSW01_01550 0.73 -0.4
314,675 + CSW01_01550 0.73 -1.0
314,675 + CSW01_01550 0.73 -0.3
314,675 + CSW01_01550 0.73 -1.1
314,682 - CSW01_01550 0.74 -0.2
314,683 - CSW01_01550 0.74 -0.5
314,683 - CSW01_01550 0.74 -0.5
314,683 - CSW01_01550 0.74 -0.1
314,683 - CSW01_01550 0.74 -0.6
314,683 - CSW01_01550 0.74 +0.2
314,683 - CSW01_01550 0.74 -0.1
314,683 - CSW01_01550 0.74 -0.4
314,683 - CSW01_01550 0.74 -0.2
314,685 + CSW01_01550 0.74 -1.4
314,685 + CSW01_01550 0.74 -0.4
314,685 + CSW01_01550 0.74 +0.0
314,693 - CSW01_01550 0.74 -0.9
314,711 - CSW01_01550 0.76 -0.7
314,812 + CSW01_01550 0.82 -2.5
314,812 + CSW01_01550 0.82 -1.7
314,812 + CSW01_01550 0.82 -1.0
314,812 + CSW01_01550 0.82 -0.6
314,812 + CSW01_01550 0.82 +0.9
314,820 - CSW01_01550 0.83 -0.3
314,883 - CSW01_01550 0.87 -0.6
314,912 + CSW01_01550 0.89 -0.2
314,913 - CSW01_01550 0.89 +0.0
314,913 - CSW01_01550 0.89 +0.0
314,913 - CSW01_01550 0.89 -1.2
314,913 - CSW01_01550 0.89 -1.2
314,920 - CSW01_01550 0.89 -1.5
314,924 + CSW01_01550 0.90 -0.8
314,929 + +0.0
314,929 + -0.6
314,929 + -0.5
314,929 + -0.4
314,959 - +0.1
315,013 + -0.2
315,014 - +0.5
315,045 + +0.7
315,055 - -1.6
315,123 + -0.6
315,183 + -0.4
315,183 + -0.9
315,191 - +0.1
315,191 - +0.4
315,204 - -0.9
315,231 + CSW01_01555 0.11 -1.2
315,236 + CSW01_01555 0.12 -0.4
315,246 - CSW01_01555 0.12 +0.4
315,259 - CSW01_01555 0.13 -0.2
315,373 - CSW01_01555 0.22 -0.7
315,382 - CSW01_01555 0.23 +0.1
315,460 - CSW01_01555 0.29 -1.4
315,535 + CSW01_01555 0.34 -0.4
315,538 + CSW01_01555 0.34 -0.9
315,585 + CSW01_01555 0.38 -0.6
315,588 - CSW01_01555 0.38 -0.4
315,588 - CSW01_01555 0.38 -0.5
315,642 - CSW01_01555 0.42 -0.4
315,655 + CSW01_01555 0.43 -0.4
315,655 + CSW01_01555 0.43 -0.7
315,688 + CSW01_01555 0.46 -1.7
315,688 + CSW01_01555 0.46 -0.8
315,688 + CSW01_01555 0.46 -0.2
315,696 - CSW01_01555 0.46 -0.6
315,696 - CSW01_01555 0.46 +0.6
315,696 - CSW01_01555 0.46 -1.7
315,733 + CSW01_01555 0.49 +0.3
315,741 - CSW01_01555 0.50 -0.2
315,741 - CSW01_01555 0.50 -1.6
315,741 - CSW01_01555 0.50 -0.5
315,741 - CSW01_01555 0.50 -0.6
315,757 + CSW01_01555 0.51 -0.3
315,790 + CSW01_01555 0.54 +1.2
315,790 + CSW01_01555 0.54 -0.4
315,790 + CSW01_01555 0.54 -0.1
315,790 + CSW01_01555 0.54 -0.4
315,790 + CSW01_01555 0.54 -0.5
315,790 + CSW01_01555 0.54 -0.2
315,790 + CSW01_01555 0.54 -0.1
315,792 + CSW01_01555 0.54 -0.6
315,798 - CSW01_01555 0.54 +0.1
315,798 - CSW01_01555 0.54 +1.3
315,798 - CSW01_01555 0.54 -0.3
315,798 - CSW01_01555 0.54 -1.4
315,798 - CSW01_01555 0.54 -0.7
315,798 - CSW01_01555 0.54 +0.2
315,798 - CSW01_01555 0.54 -0.9
315,798 - CSW01_01555 0.54 +0.0
315,798 - CSW01_01555 0.54 -1.2
315,798 - CSW01_01555 0.54 -0.6
315,798 - CSW01_01555 0.54 +0.5
315,800 + CSW01_01555 0.54 +0.1
315,805 + CSW01_01555 0.55 -0.7
315,805 + CSW01_01555 0.55 -0.1
315,805 + CSW01_01555 0.55 -1.6
315,919 + CSW01_01555 0.63 -1.3
315,919 + CSW01_01555 0.63 +0.6
315,927 - CSW01_01555 0.64 -0.6
315,927 - CSW01_01555 0.64 +0.4
316,055 - CSW01_01555 0.74 -0.4
316,055 - CSW01_01555 0.74 -0.9
316,055 - CSW01_01555 0.74 -0.8
316,055 - CSW01_01555 0.74 -0.3
316,064 + CSW01_01555 0.74 -0.2
316,064 + CSW01_01555 0.74 -1.1
316,072 - CSW01_01555 0.75 -0.2

Or see this region's nucleotide sequence