Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01165

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01155 and CSW01_01160 are separated by 294 nucleotidesCSW01_01160 and CSW01_01165 are separated by 13 nucleotidesCSW01_01165 and CSW01_01170 are separated by 220 nucleotidesCSW01_01170 and CSW01_01175 are separated by 9 nucleotides CSW01_01155: CSW01_01155 - DNA repair protein RadC, at 225,261 to 225,935 _01155 CSW01_01160: CSW01_01160 - 50S ribosomal protein L28, at 226,230 to 226,466 _01160 CSW01_01165: CSW01_01165 - 50S ribosomal protein L33, at 226,480 to 226,647 _01165 CSW01_01170: CSW01_01170 - hypothetical protein, at 226,868 to 227,356 _01170 CSW01_01175: CSW01_01175 - formamidopyrimidine-DNA glycosylase, at 227,366 to 228,175 _01175 Position (kb) 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.485 kb on - strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.513 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.530 kb on + strand, within CSW01_01155at 225.538 kb on - strand, within CSW01_01155at 225.555 kb on - strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.559 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.564 kb on + strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.567 kb on - strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.569 kb on + strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.572 kb on - strand, within CSW01_01155at 225.574 kb on + strand, within CSW01_01155at 225.632 kb on + strand, within CSW01_01155at 225.720 kb on - strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.749 kb on + strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.757 kb on - strand, within CSW01_01155at 225.806 kb on + strand, within CSW01_01155at 225.816 kb on + strand, within CSW01_01155at 225.821 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.829 kb on + strand, within CSW01_01155at 225.853 kb on + strand, within CSW01_01155at 225.859 kb on - strand, within CSW01_01155at 225.910 kb on + strandat 225.934 kb on + strandat 225.934 kb on + strandat 225.942 kb on - strandat 225.948 kb on - strandat 226.536 kb on + strand, within CSW01_01165at 226.745 kb on + strandat 226.745 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.752 kb on + strandat 226.753 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.760 kb on - strandat 226.857 kb on - strandat 226.900 kb on + strandat 227.014 kb on + strand, within CSW01_01170at 227.022 kb on - strand, within CSW01_01170at 227.039 kb on - strand, within CSW01_01170at 227.052 kb on - strand, within CSW01_01170at 227.081 kb on + strand, within CSW01_01170at 227.129 kb on - strand, within CSW01_01170at 227.136 kb on + strand, within CSW01_01170at 227.144 kb on - strand, within CSW01_01170at 227.159 kb on - strand, within CSW01_01170at 227.169 kb on - strand, within CSW01_01170at 227.258 kb on - strand, within CSW01_01170at 227.264 kb on - strand, within CSW01_01170at 227.341 kb on - strandat 227.397 kb on + strandat 227.417 kb on - strandat 227.432 kb on + strandat 227.432 kb on + strandat 227.440 kb on - strandat 227.452 kb on - strand, within CSW01_01175at 227.459 kb on + strand, within CSW01_01175at 227.469 kb on + strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.484 kb on + strand, within CSW01_01175at 227.492 kb on - strand, within CSW01_01175at 227.563 kb on - strand, within CSW01_01175

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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225,485 - CSW01_01155 0.33 -0.3
225,485 - CSW01_01155 0.33 -0.8
225,485 - CSW01_01155 0.33 -0.1
225,485 - CSW01_01155 0.33 -0.3
225,513 + CSW01_01155 0.37 -0.5
225,513 + CSW01_01155 0.37 +0.2
225,530 + CSW01_01155 0.40 -0.2
225,530 + CSW01_01155 0.40 +0.4
225,530 + CSW01_01155 0.40 +0.3
225,538 - CSW01_01155 0.41 +0.0
225,555 - CSW01_01155 0.44 +0.2
225,559 + CSW01_01155 0.44 -0.2
225,559 + CSW01_01155 0.44 +0.1
225,564 + CSW01_01155 0.45 -0.3
225,564 + CSW01_01155 0.45 +0.2
225,564 + CSW01_01155 0.45 +0.0
225,564 + CSW01_01155 0.45 -0.7
225,564 + CSW01_01155 0.45 -0.0
225,564 + CSW01_01155 0.45 -0.1
225,567 - CSW01_01155 0.45 -0.8
225,567 - CSW01_01155 0.45 -1.0
225,569 + CSW01_01155 0.46 -0.0
225,569 + CSW01_01155 0.46 -0.1
225,572 - CSW01_01155 0.46 -1.0
225,572 - CSW01_01155 0.46 -0.2
225,572 - CSW01_01155 0.46 +0.6
225,572 - CSW01_01155 0.46 +1.1
225,574 + CSW01_01155 0.46 -0.2
225,632 + CSW01_01155 0.55 -0.0
225,720 - CSW01_01155 0.68 +0.2
225,749 + CSW01_01155 0.72 -0.9
225,749 + CSW01_01155 0.72 -0.2
225,757 - CSW01_01155 0.73 -0.2
225,757 - CSW01_01155 0.73 +0.5
225,757 - CSW01_01155 0.73 +0.1
225,757 - CSW01_01155 0.73 +0.1
225,806 + CSW01_01155 0.81 +0.6
225,816 + CSW01_01155 0.82 -0.2
225,821 + CSW01_01155 0.83 +0.2
225,829 + CSW01_01155 0.84 -1.3
225,829 + CSW01_01155 0.84 +0.5
225,853 + CSW01_01155 0.88 -0.2
225,859 - CSW01_01155 0.89 +0.1
225,910 + +0.6
225,934 + -0.4
225,934 + -0.2
225,942 - -0.8
225,948 - +0.3
226,536 + CSW01_01165 0.33 -1.9
226,745 + +0.2
226,745 + -0.5
226,752 + -1.8
226,752 + +0.5
226,752 + -0.9
226,753 - +0.8
226,760 - +0.5
226,760 - +0.2
226,760 - +0.1
226,760 - -0.1
226,760 - +0.1
226,857 - +0.5
226,900 + -0.2
227,014 + CSW01_01170 0.30 +0.5
227,022 - CSW01_01170 0.31 +0.0
227,039 - CSW01_01170 0.35 +0.4
227,052 - CSW01_01170 0.38 -0.0
227,081 + CSW01_01170 0.44 -0.0
227,129 - CSW01_01170 0.53 -0.3
227,136 + CSW01_01170 0.55 +0.0
227,144 - CSW01_01170 0.56 -0.0
227,159 - CSW01_01170 0.60 +1.2
227,169 - CSW01_01170 0.62 +0.6
227,258 - CSW01_01170 0.80 +0.0
227,264 - CSW01_01170 0.81 +0.0
227,341 - +0.7
227,397 + -0.5
227,417 - +0.0
227,432 + -0.8
227,432 + -0.2
227,440 - -0.3
227,452 - CSW01_01175 0.11 +1.8
227,459 + CSW01_01175 0.11 +0.0
227,469 + CSW01_01175 0.13 -0.2
227,477 - CSW01_01175 0.14 +0.1
227,477 - CSW01_01175 0.14 -0.2
227,477 - CSW01_01175 0.14 +0.3
227,484 + CSW01_01175 0.15 -1.0
227,492 - CSW01_01175 0.16 +0.2
227,563 - CSW01_01175 0.24 +0.4

Or see this region's nucleotide sequence