Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01145

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01130 and CSW01_01135 overlap by 4 nucleotidesCSW01_01135 and CSW01_01140 overlap by 45 nucleotidesCSW01_01140 and CSW01_01145 are separated by 65 nucleotidesCSW01_01145 and CSW01_01150 are separated by 167 nucleotides CSW01_01130: CSW01_01130 - lipid A biosynthesis lauroyl acyltransferase, at 220,386 to 221,342 _01130 CSW01_01135: CSW01_01135 - nucleoid occlusion factor SlmA, at 221,339 to 221,929 _01135 CSW01_01140: CSW01_01140 - lipid A biosynthesis lauroyl acyltransferase, at 221,885 to 222,022 _01140 CSW01_01145: CSW01_01145 - bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB, at 222,088 to 223,287 _01145 CSW01_01150: CSW01_01150 - methyl-accepting chemotaxis protein, at 223,455 to 225,149 _01150 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1at 221.332 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.360 kb on - strandat 221.432 kb on + strand, within CSW01_01135at 221.432 kb on + strand, within CSW01_01135at 221.432 kb on + strand, within CSW01_01135at 221.438 kb on + strand, within CSW01_01135at 221.441 kb on - strand, within CSW01_01135at 221.441 kb on - strand, within CSW01_01135at 221.450 kb on - strand, within CSW01_01135at 221.494 kb on - strand, within CSW01_01135at 221.509 kb on - strand, within CSW01_01135at 221.518 kb on + strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.599 kb on - strand, within CSW01_01135at 221.616 kb on + strand, within CSW01_01135at 221.646 kb on - strand, within CSW01_01135at 221.799 kb on + strand, within CSW01_01135at 221.821 kb on - strand, within CSW01_01135at 221.821 kb on - strand, within CSW01_01135at 221.845 kb on + strand, within CSW01_01135at 221.890 kb on + strandat 221.982 kb on + strand, within CSW01_01140at 222.002 kb on + strand, within CSW01_01140at 222.017 kb on + strandat 222.017 kb on + strandat 222.017 kb on - strandat 222.027 kb on + strandat 222.027 kb on + strandat 222.035 kb on - strandat 222.035 kb on - strandat 222.035 kb on - strandat 222.035 kb on - strandat 223.316 kb on + strandat 223.338 kb on + strandat 223.356 kb on + strandat 223.361 kb on + strandat 223.366 kb on - strandat 223.366 kb on - strandat 223.482 kb on + strandat 223.490 kb on - strandat 223.539 kb on + strandat 223.539 kb on + strandat 223.544 kb on + strandat 223.544 kb on + strandat 223.547 kb on - strandat 223.552 kb on - strandat 223.577 kb on - strandat 223.637 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.671 kb on + strand, within CSW01_01150at 223.678 kb on + strand, within CSW01_01150at 223.777 kb on + strand, within CSW01_01150at 223.777 kb on + strand, within CSW01_01150at 223.795 kb on - strand, within CSW01_01150at 223.797 kb on - strand, within CSW01_01150at 223.813 kb on - strand, within CSW01_01150at 223.819 kb on - strand, within CSW01_01150at 223.833 kb on - strand, within CSW01_01150at 223.848 kb on + strand, within CSW01_01150at 223.944 kb on - strand, within CSW01_01150at 223.961 kb on + strand, within CSW01_01150at 224.033 kb on - strand, within CSW01_01150at 224.065 kb on - strand, within CSW01_01150at 224.133 kb on - strand, within CSW01_01150at 224.133 kb on - strand, within CSW01_01150at 224.158 kb on + strand, within CSW01_01150at 224.158 kb on + strand, within CSW01_01150at 224.166 kb on - strand, within CSW01_01150at 224.169 kb on + strand, within CSW01_01150at 224.178 kb on + strand, within CSW01_01150at 224.185 kb on + strand, within CSW01_01150at 224.185 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.231 kb on + strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.239 kb on - strand, within CSW01_01150at 224.276 kb on + strand, within CSW01_01150

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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221,332 + -1.0
221,340 + -0.6
221,340 + +0.3
221,340 + -1.5
221,340 + -0.8
221,340 + -0.5
221,340 + -0.7
221,340 + -1.0
221,340 + -1.0
221,340 + -1.4
221,348 - -0.2
221,348 - -0.0
221,348 - +0.3
221,348 - -0.3
221,348 - +0.0
221,348 - +1.4
221,348 - +0.5
221,348 - -0.0
221,348 - -0.4
221,348 - -0.5
221,348 - +0.0
221,348 - +0.2
221,360 - -0.0
221,432 + CSW01_01135 0.16 -2.1
221,432 + CSW01_01135 0.16 +0.1
221,432 + CSW01_01135 0.16 -0.3
221,438 + CSW01_01135 0.17 -1.9
221,441 - CSW01_01135 0.17 -0.4
221,441 - CSW01_01135 0.17 -0.1
221,450 - CSW01_01135 0.19 -0.1
221,494 - CSW01_01135 0.26 -1.0
221,509 - CSW01_01135 0.29 +0.1
221,518 + CSW01_01135 0.30 -1.5
221,543 - CSW01_01135 0.35 +0.3
221,543 - CSW01_01135 0.35 -0.1
221,543 - CSW01_01135 0.35 -0.1
221,591 + CSW01_01135 0.43 +0.3
221,591 + CSW01_01135 0.43 -0.3
221,591 + CSW01_01135 0.43 +0.3
221,591 + CSW01_01135 0.43 -0.8
221,591 + CSW01_01135 0.43 -0.5
221,599 - CSW01_01135 0.44 -0.5
221,616 + CSW01_01135 0.47 +0.5
221,646 - CSW01_01135 0.52 -0.6
221,799 + CSW01_01135 0.78 +0.5
221,821 - CSW01_01135 0.82 +0.2
221,821 - CSW01_01135 0.82 +0.9
221,845 + CSW01_01135 0.86 +0.4
221,890 + +0.0
221,982 + CSW01_01140 0.70 -0.1
222,002 + CSW01_01140 0.85 +0.3
222,017 + -0.6
222,017 + +0.3
222,017 - +0.1
222,027 + -1.0
222,027 + +0.1
222,035 - -0.3
222,035 - +0.0
222,035 - +0.1
222,035 - +0.4
223,316 + +0.0
223,338 + -0.6
223,356 + +0.0
223,361 + -0.2
223,366 - -0.3
223,366 - -0.1
223,482 + -0.7
223,490 - +0.5
223,539 + +1.0
223,539 + -0.3
223,544 + -0.2
223,544 + +0.2
223,547 - -0.2
223,552 - +0.3
223,577 - -0.5
223,637 + CSW01_01150 0.11 +0.3
223,671 + CSW01_01150 0.13 +0.1
223,671 + CSW01_01150 0.13 -0.1
223,671 + CSW01_01150 0.13 -0.2
223,678 + CSW01_01150 0.13 +0.4
223,777 + CSW01_01150 0.19 -0.1
223,777 + CSW01_01150 0.19 +0.4
223,795 - CSW01_01150 0.20 -0.3
223,797 - CSW01_01150 0.20 +0.6
223,813 - CSW01_01150 0.21 -0.1
223,819 - CSW01_01150 0.21 -1.8
223,833 - CSW01_01150 0.22 +0.5
223,848 + CSW01_01150 0.23 -1.4
223,944 - CSW01_01150 0.29 -0.0
223,961 + CSW01_01150 0.30 -1.2
224,033 - CSW01_01150 0.34 +0.6
224,065 - CSW01_01150 0.36 -0.6
224,133 - CSW01_01150 0.40 -0.1
224,133 - CSW01_01150 0.40 +0.6
224,158 + CSW01_01150 0.41 +1.3
224,158 + CSW01_01150 0.41 -0.4
224,166 - CSW01_01150 0.42 -0.0
224,169 + CSW01_01150 0.42 -0.1
224,178 + CSW01_01150 0.43 +0.1
224,185 + CSW01_01150 0.43 -0.2
224,185 + CSW01_01150 0.43 +0.3
224,231 + CSW01_01150 0.46 -0.9
224,231 + CSW01_01150 0.46 -1.2
224,231 + CSW01_01150 0.46 -0.0
224,231 + CSW01_01150 0.46 +0.3
224,231 + CSW01_01150 0.46 +0.9
224,239 - CSW01_01150 0.46 -0.7
224,239 - CSW01_01150 0.46 -0.3
224,239 - CSW01_01150 0.46 +0.1
224,276 + CSW01_01150 0.48 +0.3

Or see this region's nucleotide sequence