Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00820

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00810 and CSW01_00815 are separated by 63 nucleotidesCSW01_00815 and CSW01_00820 are separated by 280 nucleotidesCSW01_00820 and CSW01_00825 are separated by 108 nucleotidesCSW01_00825 and CSW01_00830 are separated by 47 nucleotidesCSW01_00830 and CSW01_00835 are separated by 110 nucleotides CSW01_00810: CSW01_00810 - 16S ribosomal RNA, at 151,051 to 152,600 _00810 CSW01_00815: CSW01_00815 - tRNA-Glu, at 152,664 to 152,739 _00815 CSW01_00820: CSW01_00820 - 23S ribosomal RNA, at 153,020 to 155,935 _00820 CSW01_00825: CSW01_00825 - 5S ribosomal RNA, at 156,044 to 156,159 _00825 CSW01_00830: CSW01_00830 - tRNA-Ser, at 156,207 to 156,297 _00830 CSW01_00835: CSW01_00835 - HTH-type transcriptional activator IlvY, at 156,408 to 157,304 _00835 Position (kb) 153 154 155 156Strain fitness (log2 ratio) -1 0 1at 156.008 kb on - strandat 156.511 kb on + strand, within CSW01_00835at 156.699 kb on - strand, within CSW01_00835at 156.706 kb on + strand, within CSW01_00835at 156.722 kb on - strand, within CSW01_00835at 156.765 kb on - strand, within CSW01_00835at 156.770 kb on + strand, within CSW01_00835at 156.925 kb on + strand, within CSW01_00835at 156.925 kb on + strand, within CSW01_00835

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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156,008 - -0.8
156,511 + CSW01_00835 0.11 -0.9
156,699 - CSW01_00835 0.32 +0.3
156,706 + CSW01_00835 0.33 +0.6
156,722 - CSW01_00835 0.35 +0.2
156,765 - CSW01_00835 0.40 +0.0
156,770 + CSW01_00835 0.40 +0.0
156,925 + CSW01_00835 0.58 +0.5
156,925 + CSW01_00835 0.58 -0.5

Or see this region's nucleotide sequence