Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00800

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00795 and CSW01_00800 are separated by 392 nucleotidesCSW01_00800 and CSW01_00805 overlap by 35 nucleotidesCSW01_00805 and CSW01_00810 are separated by 550 nucleotides CSW01_00795: CSW01_00795 - alkaline serine protease, at 147,279 to 148,886 _00795 CSW01_00800: CSW01_00800 - glutamate racemase, at 149,279 to 150,076 _00800 CSW01_00805: CSW01_00805 - RNA-binding protein, at 150,042 to 150,500 _00805 CSW01_00810: CSW01_00810 - 16S ribosomal RNA, at 151,051 to 152,600 _00810 Position (kb) 149 150 151Strain fitness (log2 ratio) -2 -1 0 1at 148.314 kb on - strand, within CSW01_00795at 148.325 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.412 kb on + strand, within CSW01_00795at 148.412 kb on + strand, within CSW01_00795at 148.427 kb on + strand, within CSW01_00795at 148.427 kb on + strand, within CSW01_00795at 148.458 kb on + strand, within CSW01_00795at 148.461 kb on - strand, within CSW01_00795at 148.501 kb on - strand, within CSW01_00795at 148.531 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.569 kb on + strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.577 kb on - strand, within CSW01_00795at 148.625 kb on + strand, within CSW01_00795at 148.640 kb on - strand, within CSW01_00795at 148.686 kb on - strand, within CSW01_00795at 148.695 kb on - strand, within CSW01_00795at 148.724 kb on - strand, within CSW01_00795at 148.764 kb on + strandat 148.774 kb on + strandat 148.779 kb on + strandat 148.823 kb on + strandat 148.823 kb on + strandat 148.823 kb on + strandat 148.831 kb on - strandat 148.916 kb on + strandat 149.223 kb on + strandat 150.071 kb on + strandat 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.095 kb on + strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.103 kb on - strand, within CSW01_00805at 150.153 kb on - strand, within CSW01_00805at 150.184 kb on - strand, within CSW01_00805at 150.189 kb on + strand, within CSW01_00805at 150.189 kb on + strand, within CSW01_00805at 150.197 kb on - strand, within CSW01_00805at 150.197 kb on - strand, within CSW01_00805at 150.226 kb on + strand, within CSW01_00805at 150.226 kb on + strand, within CSW01_00805at 150.255 kb on - strand, within CSW01_00805at 150.327 kb on - strand, within CSW01_00805at 150.383 kb on - strand, within CSW01_00805at 150.393 kb on - strand, within CSW01_00805at 150.420 kb on + strand, within CSW01_00805at 150.480 kb on - strandat 150.549 kb on - strandat 150.609 kb on + strandat 150.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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148,314 - CSW01_00795 0.64 -0.1
148,325 + CSW01_00795 0.65 +0.1
148,335 + CSW01_00795 0.66 +0.8
148,335 + CSW01_00795 0.66 -1.5
148,335 + CSW01_00795 0.66 -0.8
148,343 - CSW01_00795 0.66 -0.0
148,343 - CSW01_00795 0.66 -0.9
148,343 - CSW01_00795 0.66 +0.0
148,412 + CSW01_00795 0.70 +0.3
148,412 + CSW01_00795 0.70 +0.3
148,427 + CSW01_00795 0.71 +0.2
148,427 + CSW01_00795 0.71 -0.2
148,458 + CSW01_00795 0.73 -0.5
148,461 - CSW01_00795 0.74 +0.1
148,501 - CSW01_00795 0.76 +0.0
148,531 + CSW01_00795 0.78 -0.2
148,567 + CSW01_00795 0.80 +0.4
148,567 + CSW01_00795 0.80 -0.5
148,567 + CSW01_00795 0.80 +0.1
148,567 + CSW01_00795 0.80 -0.1
148,567 + CSW01_00795 0.80 +0.9
148,567 + CSW01_00795 0.80 +0.8
148,567 + CSW01_00795 0.80 +0.3
148,569 + CSW01_00795 0.80 +0.2
148,575 - CSW01_00795 0.81 -0.2
148,575 - CSW01_00795 0.81 -0.2
148,575 - CSW01_00795 0.81 -0.1
148,575 - CSW01_00795 0.81 -0.9
148,577 - CSW01_00795 0.81 -0.2
148,625 + CSW01_00795 0.84 +0.2
148,640 - CSW01_00795 0.85 -0.1
148,686 - CSW01_00795 0.88 +0.3
148,695 - CSW01_00795 0.88 -0.2
148,724 - CSW01_00795 0.90 -0.5
148,764 + +0.9
148,774 + -0.3
148,779 + -0.3
148,823 + -0.0
148,823 + -0.5
148,823 + +0.2
148,831 - +0.5
148,916 + -0.5
149,223 + +0.6
150,071 + -0.7
150,095 + CSW01_00805 0.12 -0.8
150,095 + CSW01_00805 0.12 -1.1
150,095 + CSW01_00805 0.12 +0.3
150,095 + CSW01_00805 0.12 +0.9
150,103 - CSW01_00805 0.13 +0.7
150,103 - CSW01_00805 0.13 +0.6
150,103 - CSW01_00805 0.13 -0.6
150,103 - CSW01_00805 0.13 -0.4
150,153 - CSW01_00805 0.24 -0.2
150,184 - CSW01_00805 0.31 -0.1
150,189 + CSW01_00805 0.32 -0.4
150,189 + CSW01_00805 0.32 -0.9
150,197 - CSW01_00805 0.34 +0.1
150,197 - CSW01_00805 0.34 +1.0
150,226 + CSW01_00805 0.40 -0.7
150,226 + CSW01_00805 0.40 +0.1
150,255 - CSW01_00805 0.46 -0.3
150,327 - CSW01_00805 0.62 +0.9
150,383 - CSW01_00805 0.74 -0.4
150,393 - CSW01_00805 0.76 -0.0
150,420 + CSW01_00805 0.82 -0.2
150,480 - -0.4
150,549 - -2.7
150,609 + +0.2
150,734 + +0.2

Or see this region's nucleotide sequence