Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00150

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00140 and CSW01_00145 are separated by 9 nucleotidesCSW01_00145 and CSW01_00150 overlap by 10 nucleotidesCSW01_00150 and CSW01_00155 are separated by 11 nucleotides CSW01_00140: CSW01_00140 - dihydroxy-acid dehydratase, at 24,792 to 26,633 _00140 CSW01_00145: CSW01_00145 - branched-chain-amino-acid transaminase, at 26,643 to 27,602 _00145 CSW01_00150: CSW01_00150 - acetolactate synthase 2 small subunit, at 27,593 to 27,877 _00150 CSW01_00155: CSW01_00155 - acetolactate synthase 2 catalytic subunit, at 27,889 to 29,535 _00155 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 26.622 kb on + strandat 26.622 kb on + strandat 26.622 kb on + strandat 26.656 kb on + strandat 26.656 kb on + strandat 26.664 kb on - strandat 26.666 kb on + strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.698 kb on + strandat 26.706 kb on - strandat 26.706 kb on - strandat 26.706 kb on - strandat 26.706 kb on - strandat 26.706 kb on - strandat 26.708 kb on + strandat 26.713 kb on + strandat 26.739 kb on - strand, within CSW01_00145at 26.739 kb on - strand, within CSW01_00145at 26.739 kb on - strand, within CSW01_00145at 26.739 kb on - strand, within CSW01_00145at 26.748 kb on + strand, within CSW01_00145at 26.748 kb on + strand, within CSW01_00145at 26.751 kb on - strand, within CSW01_00145at 26.753 kb on + strand, within CSW01_00145at 26.756 kb on - strand, within CSW01_00145at 26.761 kb on - strand, within CSW01_00145at 26.841 kb on - strand, within CSW01_00145at 26.873 kb on + strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.881 kb on - strand, within CSW01_00145at 26.925 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.930 kb on + strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.938 kb on - strand, within CSW01_00145at 26.940 kb on + strand, within CSW01_00145at 26.993 kb on - strand, within CSW01_00145at 27.006 kb on - strand, within CSW01_00145at 27.014 kb on + strand, within CSW01_00145at 27.024 kb on - strand, within CSW01_00145at 27.029 kb on - strand, within CSW01_00145at 27.034 kb on - strand, within CSW01_00145at 27.040 kb on + strand, within CSW01_00145at 27.046 kb on + strand, within CSW01_00145at 27.074 kb on + strand, within CSW01_00145at 27.082 kb on - strand, within CSW01_00145at 27.123 kb on + strand, within CSW01_00145at 27.129 kb on - strand, within CSW01_00145at 27.144 kb on + strand, within CSW01_00145at 27.179 kb on + strand, within CSW01_00145at 27.197 kb on - strand, within CSW01_00145at 27.273 kb on - strand, within CSW01_00145at 27.294 kb on - strand, within CSW01_00145at 27.306 kb on - strand, within CSW01_00145at 27.391 kb on + strand, within CSW01_00145at 27.407 kb on + strand, within CSW01_00145at 27.439 kb on - strand, within CSW01_00145at 27.466 kb on + strand, within CSW01_00145at 27.466 kb on + strand, within CSW01_00145at 27.466 kb on + strand, within CSW01_00145at 27.494 kb on + strand, within CSW01_00145at 27.504 kb on - strand, within CSW01_00145at 27.653 kb on + strand, within CSW01_00150at 27.663 kb on - strand, within CSW01_00150at 27.712 kb on + strand, within CSW01_00150at 27.712 kb on + strand, within CSW01_00150at 27.712 kb on + strand, within CSW01_00150at 27.720 kb on - strand, within CSW01_00150at 27.720 kb on - strand, within CSW01_00150at 27.720 kb on - strand, within CSW01_00150at 27.720 kb on - strand, within CSW01_00150at 27.731 kb on + strand, within CSW01_00150at 27.733 kb on + strand, within CSW01_00150at 27.760 kb on + strand, within CSW01_00150at 27.771 kb on + strand, within CSW01_00150at 27.779 kb on - strand, within CSW01_00150at 27.850 kb on + strandat 27.869 kb on + strandat 27.878 kb on - strandat 27.885 kb on + strandat 27.885 kb on + strandat 27.885 kb on + strandat 27.885 kb on + strandat 27.885 kb on + strandat 27.885 kb on + strandat 27.887 kb on + strandat 27.887 kb on + strandat 27.887 kb on + strandat 27.887 kb on + strandat 27.888 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.893 kb on - strandat 27.895 kb on + strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.895 kb on - strandat 27.914 kb on - strandat 27.964 kb on - strandat 27.994 kb on + strandat 28.007 kb on - strandat 28.011 kb on + strandat 28.011 kb on + strandat 28.011 kb on + strandat 28.057 kb on + strand, within CSW01_00155at 28.057 kb on + strand, within CSW01_00155at 28.057 kb on + strand, within CSW01_00155at 28.057 kb on + strand, within CSW01_00155at 28.057 kb on + strand, within CSW01_00155at 28.064 kb on + strand, within CSW01_00155at 28.064 kb on + strand, within CSW01_00155at 28.064 kb on + strand, within CSW01_00155at 28.065 kb on - strand, within CSW01_00155at 28.072 kb on - strand, within CSW01_00155at 28.072 kb on - strand, within CSW01_00155at 28.124 kb on + strand, within CSW01_00155at 28.134 kb on - strand, within CSW01_00155at 28.151 kb on + strand, within CSW01_00155at 28.164 kb on - strand, within CSW01_00155at 28.204 kb on + strand, within CSW01_00155at 28.204 kb on + strand, within CSW01_00155at 28.206 kb on + strand, within CSW01_00155at 28.212 kb on - strand, within CSW01_00155at 28.212 kb on - strand, within CSW01_00155at 28.212 kb on - strand, within CSW01_00155at 28.258 kb on + strand, within CSW01_00155at 28.261 kb on - strand, within CSW01_00155at 28.284 kb on - strand, within CSW01_00155at 28.323 kb on - strand, within CSW01_00155at 28.338 kb on - strand, within CSW01_00155at 28.346 kb on - strand, within CSW01_00155at 28.354 kb on + strand, within CSW01_00155at 28.355 kb on - strand, within CSW01_00155at 28.362 kb on - strand, within CSW01_00155at 28.362 kb on - strand, within CSW01_00155at 28.378 kb on + strand, within CSW01_00155at 28.388 kb on + strand, within CSW01_00155at 28.393 kb on + strand, within CSW01_00155at 28.393 kb on + strand, within CSW01_00155at 28.396 kb on - strand, within CSW01_00155at 28.401 kb on - strand, within CSW01_00155at 28.414 kb on + strand, within CSW01_00155at 28.414 kb on + strand, within CSW01_00155at 28.424 kb on + strand, within CSW01_00155at 28.432 kb on - strand, within CSW01_00155at 28.462 kb on - strand, within CSW01_00155at 28.486 kb on - strand, within CSW01_00155at 28.496 kb on + strand, within CSW01_00155at 28.499 kb on - strand, within CSW01_00155at 28.519 kb on + strand, within CSW01_00155at 28.524 kb on + strand, within CSW01_00155at 28.536 kb on + strand, within CSW01_00155at 28.542 kb on + strand, within CSW01_00155at 28.542 kb on + strand, within CSW01_00155at 28.561 kb on + strand, within CSW01_00155at 28.581 kb on + strand, within CSW01_00155at 28.589 kb on - strand, within CSW01_00155at 28.596 kb on - strand, within CSW01_00155at 28.605 kb on + strand, within CSW01_00155at 28.605 kb on + strand, within CSW01_00155at 28.605 kb on + strand, within CSW01_00155at 28.608 kb on - strand, within CSW01_00155at 28.613 kb on - strand, within CSW01_00155at 28.613 kb on - strand, within CSW01_00155at 28.613 kb on - strand, within CSW01_00155at 28.618 kb on - strand, within CSW01_00155at 28.618 kb on - strand, within CSW01_00155at 28.677 kb on + strand, within CSW01_00155at 28.690 kb on + strand, within CSW01_00155at 28.747 kb on + strand, within CSW01_00155at 28.748 kb on - strand, within CSW01_00155at 28.755 kb on + strand, within CSW01_00155at 28.755 kb on - strand, within CSW01_00155at 28.793 kb on - strand, within CSW01_00155at 28.794 kb on + strand, within CSW01_00155at 28.794 kb on + strand, within CSW01_00155at 28.794 kb on + strand, within CSW01_00155at 28.802 kb on - strand, within CSW01_00155at 28.802 kb on - strand, within CSW01_00155at 28.802 kb on - strand, within CSW01_00155at 28.802 kb on - strand, within CSW01_00155at 28.802 kb on - strand, within CSW01_00155at 28.804 kb on + strand, within CSW01_00155at 28.821 kb on + strand, within CSW01_00155at 28.828 kb on + strand, within CSW01_00155at 28.834 kb on + strand, within CSW01_00155at 28.836 kb on - strand, within CSW01_00155at 28.836 kb on - strand, within CSW01_00155at 28.842 kb on - strand, within CSW01_00155at 28.842 kb on - strand, within CSW01_00155at 28.857 kb on - strand, within CSW01_00155at 28.862 kb on + strand, within CSW01_00155at 28.870 kb on - strand, within CSW01_00155at 28.870 kb on - strand, within CSW01_00155at 28.870 kb on - strand, within CSW01_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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26,622 + +1.4
26,622 + +0.2
26,622 + -0.0
26,656 + +1.3
26,656 + -0.8
26,664 - +0.0
26,666 + -0.6
26,698 + +0.1
26,698 + -0.5
26,698 + +0.3
26,706 - -0.8
26,706 - -0.4
26,706 - -0.5
26,706 - -0.2
26,706 - +0.0
26,708 + -0.6
26,713 + +0.7
26,739 - CSW01_00145 0.10 -0.5
26,739 - CSW01_00145 0.10 +1.1
26,739 - CSW01_00145 0.10 +0.0
26,739 - CSW01_00145 0.10 -0.7
26,748 + CSW01_00145 0.11 -1.5
26,748 + CSW01_00145 0.11 -0.6
26,751 - CSW01_00145 0.11 -0.0
26,753 + CSW01_00145 0.11 -0.2
26,756 - CSW01_00145 0.12 +0.0
26,761 - CSW01_00145 0.12 +0.3
26,841 - CSW01_00145 0.21 -0.1
26,873 + CSW01_00145 0.24 +0.6
26,881 - CSW01_00145 0.25 -0.2
26,881 - CSW01_00145 0.25 +0.3
26,881 - CSW01_00145 0.25 -0.0
26,881 - CSW01_00145 0.25 -0.3
26,881 - CSW01_00145 0.25 +0.2
26,881 - CSW01_00145 0.25 +0.1
26,925 + CSW01_00145 0.29 +1.2
26,930 + CSW01_00145 0.30 -0.3
26,930 + CSW01_00145 0.30 +0.1
26,930 + CSW01_00145 0.30 -0.5
26,930 + CSW01_00145 0.30 -0.1
26,930 + CSW01_00145 0.30 -0.1
26,930 + CSW01_00145 0.30 -1.4
26,930 + CSW01_00145 0.30 -0.5
26,930 + CSW01_00145 0.30 +0.3
26,930 + CSW01_00145 0.30 +0.1
26,930 + CSW01_00145 0.30 -0.4
26,930 + CSW01_00145 0.30 -1.2
26,930 + CSW01_00145 0.30 +1.0
26,938 - CSW01_00145 0.31 -0.1
26,938 - CSW01_00145 0.31 +0.8
26,938 - CSW01_00145 0.31 -1.2
26,938 - CSW01_00145 0.31 -0.2
26,938 - CSW01_00145 0.31 +0.0
26,938 - CSW01_00145 0.31 -0.1
26,938 - CSW01_00145 0.31 +0.7
26,938 - CSW01_00145 0.31 -0.8
26,938 - CSW01_00145 0.31 +0.4
26,938 - CSW01_00145 0.31 +0.1
26,940 + CSW01_00145 0.31 +0.4
26,993 - CSW01_00145 0.36 -0.6
27,006 - CSW01_00145 0.38 -0.2
27,014 + CSW01_00145 0.39 +0.7
27,024 - CSW01_00145 0.40 +0.1
27,029 - CSW01_00145 0.40 -0.4
27,034 - CSW01_00145 0.41 +0.2
27,040 + CSW01_00145 0.41 -1.1
27,046 + CSW01_00145 0.42 -0.0
27,074 + CSW01_00145 0.45 -0.2
27,082 - CSW01_00145 0.46 +0.8
27,123 + CSW01_00145 0.50 -0.5
27,129 - CSW01_00145 0.51 -0.2
27,144 + CSW01_00145 0.52 -0.9
27,179 + CSW01_00145 0.56 +0.5
27,197 - CSW01_00145 0.58 -0.1
27,273 - CSW01_00145 0.66 +0.0
27,294 - CSW01_00145 0.68 -0.2
27,306 - CSW01_00145 0.69 -0.1
27,391 + CSW01_00145 0.78 +0.9
27,407 + CSW01_00145 0.80 +0.1
27,439 - CSW01_00145 0.83 -0.2
27,466 + CSW01_00145 0.86 +0.7
27,466 + CSW01_00145 0.86 -0.3
27,466 + CSW01_00145 0.86 -0.5
27,494 + CSW01_00145 0.89 +0.2
27,504 - CSW01_00145 0.90 +0.2
27,653 + CSW01_00150 0.21 -0.3
27,663 - CSW01_00150 0.25 -0.1
27,712 + CSW01_00150 0.42 +0.6
27,712 + CSW01_00150 0.42 +0.1
27,712 + CSW01_00150 0.42 +0.7
27,720 - CSW01_00150 0.45 +0.5
27,720 - CSW01_00150 0.45 -0.2
27,720 - CSW01_00150 0.45 -0.0
27,720 - CSW01_00150 0.45 +0.0
27,731 + CSW01_00150 0.48 +0.4
27,733 + CSW01_00150 0.49 +0.9
27,760 + CSW01_00150 0.59 +0.4
27,771 + CSW01_00150 0.62 -0.3
27,779 - CSW01_00150 0.65 +0.3
27,850 + +0.7
27,869 + -0.0
27,878 - -0.2
27,885 + -0.3
27,885 + -0.3
27,885 + -0.4
27,885 + +0.1
27,885 + +0.4
27,885 + +0.7
27,887 + +0.1
27,887 + +0.1
27,887 + +0.1
27,887 + +0.3
27,888 - +0.1
27,893 - +0.0
27,893 - -0.3
27,893 - -0.2
27,893 - +0.7
27,893 - +0.2
27,893 - +0.2
27,893 - -0.2
27,895 + +2.0
27,895 - -0.1
27,895 - +0.4
27,895 - -1.5
27,895 - -0.7
27,895 - +0.3
27,914 - -1.3
27,964 - +0.5
27,994 + +0.0
28,007 - -0.6
28,011 + -0.2
28,011 + +0.2
28,011 + -0.8
28,057 + CSW01_00155 0.10 +0.6
28,057 + CSW01_00155 0.10 +0.2
28,057 + CSW01_00155 0.10 +0.1
28,057 + CSW01_00155 0.10 -1.1
28,057 + CSW01_00155 0.10 +0.5
28,064 + CSW01_00155 0.11 +0.3
28,064 + CSW01_00155 0.11 +1.3
28,064 + CSW01_00155 0.11 -0.9
28,065 - CSW01_00155 0.11 +0.4
28,072 - CSW01_00155 0.11 -1.8
28,072 - CSW01_00155 0.11 -0.2
28,124 + CSW01_00155 0.14 -0.6
28,134 - CSW01_00155 0.15 +0.1
28,151 + CSW01_00155 0.16 +0.5
28,164 - CSW01_00155 0.17 -0.5
28,204 + CSW01_00155 0.19 -0.4
28,204 + CSW01_00155 0.19 +0.3
28,206 + CSW01_00155 0.19 -0.4
28,212 - CSW01_00155 0.20 -0.0
28,212 - CSW01_00155 0.20 +0.1
28,212 - CSW01_00155 0.20 -0.0
28,258 + CSW01_00155 0.22 +0.6
28,261 - CSW01_00155 0.23 +0.0
28,284 - CSW01_00155 0.24 -0.0
28,323 - CSW01_00155 0.26 -0.0
28,338 - CSW01_00155 0.27 +0.3
28,346 - CSW01_00155 0.28 +0.0
28,354 + CSW01_00155 0.28 -0.7
28,355 - CSW01_00155 0.28 -1.4
28,362 - CSW01_00155 0.29 +0.0
28,362 - CSW01_00155 0.29 -0.1
28,378 + CSW01_00155 0.30 -0.4
28,388 + CSW01_00155 0.30 +1.4
28,393 + CSW01_00155 0.31 +0.1
28,393 + CSW01_00155 0.31 +0.0
28,396 - CSW01_00155 0.31 -0.3
28,401 - CSW01_00155 0.31 +0.1
28,414 + CSW01_00155 0.32 +0.5
28,414 + CSW01_00155 0.32 +0.3
28,424 + CSW01_00155 0.32 -0.3
28,432 - CSW01_00155 0.33 -0.0
28,462 - CSW01_00155 0.35 -0.7
28,486 - CSW01_00155 0.36 +0.2
28,496 + CSW01_00155 0.37 -0.7
28,499 - CSW01_00155 0.37 -0.8
28,519 + CSW01_00155 0.38 +0.2
28,524 + CSW01_00155 0.39 -1.0
28,536 + CSW01_00155 0.39 -0.2
28,542 + CSW01_00155 0.40 +0.1
28,542 + CSW01_00155 0.40 +0.1
28,561 + CSW01_00155 0.41 +0.2
28,581 + CSW01_00155 0.42 -0.8
28,589 - CSW01_00155 0.43 +0.2
28,596 - CSW01_00155 0.43 -0.5
28,605 + CSW01_00155 0.43 +0.3
28,605 + CSW01_00155 0.43 +0.2
28,605 + CSW01_00155 0.43 +0.4
28,608 - CSW01_00155 0.44 -0.3
28,613 - CSW01_00155 0.44 +0.1
28,613 - CSW01_00155 0.44 +0.9
28,613 - CSW01_00155 0.44 +0.5
28,618 - CSW01_00155 0.44 +0.2
28,618 - CSW01_00155 0.44 +1.4
28,677 + CSW01_00155 0.48 -0.4
28,690 + CSW01_00155 0.49 +1.1
28,747 + CSW01_00155 0.52 -0.7
28,748 - CSW01_00155 0.52 -0.2
28,755 + CSW01_00155 0.53 +0.4
28,755 - CSW01_00155 0.53 +0.4
28,793 - CSW01_00155 0.55 +1.2
28,794 + CSW01_00155 0.55 -1.6
28,794 + CSW01_00155 0.55 -0.3
28,794 + CSW01_00155 0.55 -0.3
28,802 - CSW01_00155 0.55 +0.7
28,802 - CSW01_00155 0.55 +0.8
28,802 - CSW01_00155 0.55 +0.5
28,802 - CSW01_00155 0.55 -0.3
28,802 - CSW01_00155 0.55 -0.5
28,804 + CSW01_00155 0.56 +1.0
28,821 + CSW01_00155 0.57 +0.5
28,828 + CSW01_00155 0.57 +1.6
28,834 + CSW01_00155 0.57 +0.2
28,836 - CSW01_00155 0.57 +0.0
28,836 - CSW01_00155 0.57 +0.1
28,842 - CSW01_00155 0.58 +1.0
28,842 - CSW01_00155 0.58 +0.3
28,857 - CSW01_00155 0.59 +0.0
28,862 + CSW01_00155 0.59 +0.0
28,870 - CSW01_00155 0.60 +0.0
28,870 - CSW01_00155 0.60 -0.1
28,870 - CSW01_00155 0.60 -0.2

Or see this region's nucleotide sequence