Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24835

Experiment: Cholin acetate 38 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24830 and AO353_24835 are separated by 45 nucleotidesAO353_24835 and AO353_24840 are separated by 18 nucleotides AO353_24830: AO353_24830 - enoyl-CoA hydratase, at 5,475,157 to 5,475,948 _24830 AO353_24835: AO353_24835 - acyl-CoA dehydrogenase, at 5,475,994 to 5,477,154 _24835 AO353_24840: AO353_24840 - acyl-CoA synthetase, at 5,477,173 to 5,479,272 _24840 Position (kb) 5475 5476 5477 5478Strain fitness (log2 ratio) -2 -1 0 1 2at 5475.101 kb on + strandat 5475.141 kb on + strandat 5475.142 kb on - strandat 5475.163 kb on - strandat 5475.317 kb on + strand, within AO353_24830at 5475.317 kb on + strand, within AO353_24830at 5475.318 kb on - strand, within AO353_24830at 5475.445 kb on + strand, within AO353_24830at 5475.445 kb on + strand, within AO353_24830at 5475.446 kb on - strand, within AO353_24830at 5475.446 kb on - strand, within AO353_24830at 5475.580 kb on + strand, within AO353_24830at 5475.946 kb on + strandat 5475.946 kb on + strandat 5475.946 kb on + strandat 5475.965 kb on + strandat 5475.965 kb on + strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.966 kb on - strandat 5475.988 kb on - strandat 5475.988 kb on - strandat 5476.156 kb on + strand, within AO353_24835at 5476.156 kb on + strand, within AO353_24835at 5476.156 kb on + strand, within AO353_24835at 5476.156 kb on + strand, within AO353_24835at 5476.156 kb on + strand, within AO353_24835at 5476.157 kb on - strand, within AO353_24835at 5476.157 kb on - strand, within AO353_24835at 5476.202 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.260 kb on - strand, within AO353_24835at 5476.318 kb on + strand, within AO353_24835at 5476.318 kb on + strand, within AO353_24835at 5476.319 kb on - strand, within AO353_24835at 5476.513 kb on + strand, within AO353_24835at 5476.513 kb on + strand, within AO353_24835at 5476.513 kb on + strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.514 kb on - strand, within AO353_24835at 5476.834 kb on + strand, within AO353_24835at 5476.834 kb on + strand, within AO353_24835at 5476.834 kb on + strand, within AO353_24835at 5476.834 kb on + strand, within AO353_24835at 5476.835 kb on - strand, within AO353_24835at 5476.835 kb on - strand, within AO353_24835at 5476.835 kb on - strand, within AO353_24835at 5477.168 kb on + strandat 5477.564 kb on - strand, within AO353_24840at 5477.579 kb on - strand, within AO353_24840at 5477.671 kb on + strand, within AO353_24840at 5477.671 kb on + strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.672 kb on - strand, within AO353_24840at 5477.710 kb on + strand, within AO353_24840at 5477.710 kb on + strand, within AO353_24840at 5477.710 kb on + strand, within AO353_24840at 5477.711 kb on - strand, within AO353_24840at 5477.711 kb on - strand, within AO353_24840at 5477.711 kb on - strand, within AO353_24840at 5477.963 kb on - strand, within AO353_24840at 5477.963 kb on - strand, within AO353_24840at 5477.963 kb on - strand, within AO353_24840at 5478.118 kb on + strand, within AO353_24840

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 38 mM
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5,475,101 + -0.4
5,475,141 + -0.2
5,475,142 - -0.7
5,475,163 - +0.9
5,475,317 + AO353_24830 0.20 +0.4
5,475,317 + AO353_24830 0.20 -0.0
5,475,318 - AO353_24830 0.20 +1.4
5,475,445 + AO353_24830 0.36 +2.4
5,475,445 + AO353_24830 0.36 +0.4
5,475,446 - AO353_24830 0.36 +0.6
5,475,446 - AO353_24830 0.36 +2.2
5,475,580 + AO353_24830 0.53 -0.1
5,475,946 + +1.2
5,475,946 + +0.1
5,475,946 + +1.6
5,475,965 + +1.0
5,475,965 + -1.4
5,475,966 - -0.9
5,475,966 - -0.4
5,475,966 - +0.9
5,475,966 - +0.4
5,475,966 - +0.2
5,475,966 - -0.2
5,475,966 - +0.8
5,475,988 - +1.0
5,475,988 - -1.2
5,476,156 + AO353_24835 0.14 +0.3
5,476,156 + AO353_24835 0.14 +0.9
5,476,156 + AO353_24835 0.14 -0.4
5,476,156 + AO353_24835 0.14 +0.6
5,476,156 + AO353_24835 0.14 +1.3
5,476,157 - AO353_24835 0.14 -0.0
5,476,157 - AO353_24835 0.14 +0.1
5,476,202 - AO353_24835 0.18 +1.5
5,476,260 - AO353_24835 0.23 -0.4
5,476,260 - AO353_24835 0.23 -1.5
5,476,260 - AO353_24835 0.23 -1.9
5,476,260 - AO353_24835 0.23 +1.1
5,476,260 - AO353_24835 0.23 +0.3
5,476,260 - AO353_24835 0.23 +1.2
5,476,318 + AO353_24835 0.28 +1.0
5,476,318 + AO353_24835 0.28 -0.7
5,476,319 - AO353_24835 0.28 -0.4
5,476,513 + AO353_24835 0.45 -0.2
5,476,513 + AO353_24835 0.45 +1.0
5,476,513 + AO353_24835 0.45 -0.4
5,476,514 - AO353_24835 0.45 -0.1
5,476,514 - AO353_24835 0.45 -1.9
5,476,514 - AO353_24835 0.45 +1.3
5,476,514 - AO353_24835 0.45 -0.6
5,476,514 - AO353_24835 0.45 -0.5
5,476,514 - AO353_24835 0.45 +0.2
5,476,834 + AO353_24835 0.72 -0.9
5,476,834 + AO353_24835 0.72 -0.2
5,476,834 + AO353_24835 0.72 +1.1
5,476,834 + AO353_24835 0.72 -0.0
5,476,835 - AO353_24835 0.72 -1.5
5,476,835 - AO353_24835 0.72 -0.0
5,476,835 - AO353_24835 0.72 +0.2
5,477,168 + -2.4
5,477,564 - AO353_24840 0.19 +0.9
5,477,579 - AO353_24840 0.19 -1.7
5,477,671 + AO353_24840 0.24 +0.6
5,477,671 + AO353_24840 0.24 +0.6
5,477,672 - AO353_24840 0.24 +0.3
5,477,672 - AO353_24840 0.24 -0.2
5,477,672 - AO353_24840 0.24 +1.6
5,477,672 - AO353_24840 0.24 -0.2
5,477,672 - AO353_24840 0.24 +0.5
5,477,672 - AO353_24840 0.24 -0.7
5,477,672 - AO353_24840 0.24 -1.4
5,477,710 + AO353_24840 0.26 +2.6
5,477,710 + AO353_24840 0.26 +0.1
5,477,710 + AO353_24840 0.26 +0.6
5,477,711 - AO353_24840 0.26 -0.9
5,477,711 - AO353_24840 0.26 -1.4
5,477,711 - AO353_24840 0.26 -0.4
5,477,963 - AO353_24840 0.38 -1.7
5,477,963 - AO353_24840 0.38 +0.4
5,477,963 - AO353_24840 0.38 +0.3
5,478,118 + AO353_24840 0.45 +0.4

Or see this region's nucleotide sequence