Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15435

Experiment: Cholin acetate 38 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholin acetate 38 mM
3,410,122	-		AO353_15430	0.38	+0.6
3,410,122	-		AO353_15430	0.38	-0.1
3,410,182	-		AO353_15430	0.45	+1.1
3,410,182	-		AO353_15430	0.45	-0.7
3,410,182	-		AO353_15430	0.45	+0.2
3,410,311	+		AO353_15430	0.59	-0.8
3,410,311	+		AO353_15430	0.59	-1.9
3,410,311	+		AO353_15430	0.59	-0.5
3,410,311	+		AO353_15430	0.59	+0.4
3,410,311	+		AO353_15430	0.59	+1.2
3,410,311	+		AO353_15430	0.59	+2.1
3,410,311	+		AO353_15430	0.59	-0.2
3,410,311	+		AO353_15430	0.59	-1.4
3,410,311	+		AO353_15430	0.59	-1.2
3,410,312	-		AO353_15430	0.59	+0.3
3,410,312	-		AO353_15430	0.59	-1.7
3,410,312	-		AO353_15430	0.59	-0.8
3,410,312	-		AO353_15430	0.59	+0.3
3,410,312	-		AO353_15430	0.59	-0.3
3,410,312	-		AO353_15430	0.59	+0.3
3,410,531	+		AO353_15430	0.83	+1.9
3,410,634	-				-1.9
3,410,634	-				+0.4
3,410,681	+				+0.1
3,410,681	+				+0.3
3,410,681	+				+0.2
3,410,681	+				+0.7
3,410,681	+				+0.1
3,410,681	+				+0.8
3,410,682	-				+0.8
3,410,682	-				-0.3
3,410,682	-				-1.2
3,410,682	-				-0.2
3,410,682	-				+1.1
3,410,682	-				-1.5
3,410,682	-				-0.9
3,410,682	-				-0.9
3,410,682	-				-0.8
3,410,716	+				-0.8
3,410,716	+				+0.6
3,410,716	+				+0.7
3,410,716	+				-1.5
3,410,716	+				-0.9
3,410,716	+				+0.8
3,410,717	-				-0.5
3,410,717	-				-1.2
3,410,732	+				-0.1
3,410,732	+				-0.5
3,410,732	+				+0.2
3,410,732	+				-2.9
3,410,732	+				+0.1
3,410,732	+				-0.4
3,410,732	+				-0.3
3,410,732	+				-1.2
3,410,732	+				-0.6
3,410,732	+				-0.4
3,410,732	+				+1.1
3,410,733	-				+0.5
3,410,733	-				-0.5
3,410,733	-				-2.5
3,410,733	-				+0.7
3,410,733	-				-0.1
3,410,733	-				+0.2
3,410,733	-				+1.4
3,410,754	+				-0.5
3,410,755	-				+0.5
3,410,770	+				+1.4
3,410,771	-				+1.5
3,410,771	-				-0.8
3,410,861	+				+0.2
3,410,861	+				-1.9
3,410,861	+				-0.5
3,410,862	-				-1.0
3,410,862	-				-0.3
3,410,862	-				+2.3
3,410,862	-				-0.1
3,410,862	-				+0.4
3,410,939	+				+0.1
3,410,940	-				+0.9
3,410,942	+				+0.2
3,410,942	+				-2.1
3,410,942	+				-0.6
3,410,942	+				+0.1
3,410,942	+				+1.5
3,410,942	+				-0.8
3,410,942	+				+0.3
3,410,942	+				-0.1
3,410,942	+				+0.1
3,410,942	+				-1.6
3,410,943	-				+0.5
3,410,943	-				+0.6
3,410,943	-				+0.6
3,410,943	-				-0.5
3,410,943	-				-0.9
3,410,943	-				-0.5
3,410,943	-				-0.1
3,410,943	-				-0.3
3,410,995	+				+0.5
3,410,996	-				+0.1
3,410,996	-				-1.2
3,411,065	+				+0.8
3,411,065	+				+0.6
3,411,065	+				-0.7
3,411,065	+				-2.5
3,411,065	+				+0.5
3,411,066	-				+0.3
3,411,066	-				-1.7
3,411,066	-				+0.6
3,411,066	-				-0.0
3,411,066	-				+1.1
3,411,066	-				-0.4
3,411,066	-				+0.7
3,411,066	-				+0.1
3,411,284	+		AO353_15435	0.22	+2.5
3,411,284	+		AO353_15435	0.22	-0.2
3,411,284	+		AO353_15435	0.22	-0.1
3,411,284	+		AO353_15435	0.22	-0.4
3,411,285	-		AO353_15435	0.22	-2.1
3,411,285	-		AO353_15435	0.22	+1.1
3,411,285	-		AO353_15435	0.22	-0.8
3,411,366	-		AO353_15435	0.27	-0.8
3,411,372	+		AO353_15435	0.28	-2.2
3,411,372	+		AO353_15435	0.28	+0.7
3,411,372	+		AO353_15435	0.28	-0.5
3,411,443	+		AO353_15435	0.32	-0.5
3,411,443	+		AO353_15435	0.32	+1.5
3,411,443	+		AO353_15435	0.32	+0.9
3,411,443	+		AO353_15435	0.32	+1.0
3,411,443	+		AO353_15435	0.32	-0.1
3,411,444	-		AO353_15435	0.32	+0.1
3,411,444	-		AO353_15435	0.32	-0.5
3,411,444	-		AO353_15435	0.32	+0.5
3,411,444	-		AO353_15435	0.32	-0.5
3,411,444	-		AO353_15435	0.32	+0.5
3,411,514	+		AO353_15435	0.37	-0.1
3,411,514	+		AO353_15435	0.37	-1.9
3,411,514	+		AO353_15435	0.37	+1.8
3,411,514	+		AO353_15435	0.37	+0.1
3,411,514	+		AO353_15435	0.37	-0.2
3,411,515	-		AO353_15435	0.37	+1.1
3,411,515	-		AO353_15435	0.37	+0.0
3,411,515	-		AO353_15435	0.37	-0.9
3,411,553	+		AO353_15435	0.39	-1.1
3,411,554	-		AO353_15435	0.39	+0.8
3,411,554	-		AO353_15435	0.39	-0.9
3,411,554	-		AO353_15435	0.39	-1.2
3,411,554	-		AO353_15435	0.39	-0.5
3,411,721	+		AO353_15435	0.50	+0.7
3,411,721	+		AO353_15435	0.50	+0.9
3,411,722	-		AO353_15435	0.50	-0.9
3,411,722	-		AO353_15435	0.50	-0.5
3,411,951	-		AO353_15435	0.65	-2.2
3,412,199	+		AO353_15435	0.81	-1.9
3,412,199	+		AO353_15435	0.81	-0.5
3,412,199	+		AO353_15435	0.81	+0.3
3,412,200	-		AO353_15435	0.81	+0.3
3,412,200	-		AO353_15435	0.81	+0.7
3,412,498	-				+0.4
3,412,510	+				-0.1
3,412,511	-				+0.3
3,412,511	-				-0.7
3,412,511	-				+0.2
3,412,523	+				+0.4
3,412,550	-				-1.2
3,412,624	+				+0.9
3,412,624	+				-2.2
3,412,624	+				+1.7
3,412,624	+				-0.9
3,412,625	-				-0.5
3,412,626	+				+1.9
3,412,626	+				-1.2
3,412,627	-				-2.2
3,412,627	-				+2.4
3,412,661	+				-0.2
3,412,740	+				+2.7
3,412,845	+		AO353_15440	0.16	-1.6
3,412,845	+		AO353_15440	0.16	-0.6
3,412,845	+		AO353_15440	0.16	+1.3
3,412,845	+		AO353_15440	0.16	-1.2
3,412,845	+		AO353_15440	0.16	+0.6
3,412,845	+		AO353_15440	0.16	+1.1
3,412,845	+		AO353_15440	0.16	+2.7
3,412,845	+		AO353_15440	0.16	-1.0
3,412,845	+		AO353_15440	0.16	-0.2
3,412,845	+		AO353_15440	0.16	+0.2
3,412,846	-		AO353_15440	0.16	+1.4
3,412,846	-		AO353_15440	0.16	-2.1
3,412,846	-		AO353_15440	0.16	-0.0
3,412,846	-		AO353_15440	0.16	+0.7
3,412,846	-		AO353_15440	0.16	-0.1
3,412,846	-		AO353_15440	0.16	+0.1
3,412,846	-		AO353_15440	0.16	+0.9
3,412,846	-		AO353_15440	0.16	+0.1
3,412,846	-		AO353_15440	0.16	-1.7
3,413,034	+		AO353_15440	0.32	+1.4
3,413,079	+		AO353_15440	0.36	+2.1
3,413,079	+		AO353_15440	0.36	+0.1
3,413,079	+		AO353_15440	0.36	+0.4
3,413,080	-		AO353_15440	0.36	-2.5
3,413,080	-		AO353_15440	0.36	+1.3
3,413,175	+		AO353_15440	0.44	+1.0
3,413,175	+		AO353_15440	0.44	+0.3
3,413,176	-		AO353_15440	0.44	+0.7
3,413,176	-		AO353_15440	0.44	-0.5
3,413,176	-		AO353_15440	0.44	+0.3
3,413,226	+		AO353_15440	0.48	-1.2
3,413,226	+		AO353_15440	0.48	-0.5
3,413,226	+		AO353_15440	0.48	-0.9
3,413,226	+		AO353_15440	0.48	+0.1
3,413,226	+		AO353_15440	0.48	+1.0
3,413,226	+		AO353_15440	0.48	-0.9
3,413,226	+		AO353_15440	0.48	+0.3
3,413,274	+		AO353_15440	0.52	-0.3
3,413,274	+		AO353_15440	0.52	+1.5
3,413,274	+		AO353_15440	0.52	+0.7
3,413,274	+		AO353_15440	0.52	-0.6
3,413,274	+		AO353_15440	0.52	-0.3
3,413,275	-		AO353_15440	0.52	+0.6
3,413,352	+		AO353_15440	0.59	+0.3
3,413,352	+		AO353_15440	0.59	+0.7
3,413,352	+		AO353_15440	0.59	-1.5
3,413,353	-		AO353_15440	0.59	+1.6
3,413,353	-		AO353_15440	0.59	-0.0
3,413,353	-		AO353_15440	0.59	-0.6