Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03750 and AO353_03755 are separated by 345 nucleotides AO353_03755 and AO353_03760 are separated by 22 nucleotides AO353_03760 and AO353_03765 are separated by 253 nucleotides AO353_03765 and AO353_03770 are separated by 127 nucleotides
AO353_03750: AO353_03750 - hypothetical protein, at 801,890 to 803,221
_03750
AO353_03755: AO353_03755 - hypothetical protein, at 803,567 to 803,956
_03755
AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338
_03760
AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966
_03765
AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393
_03770
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 803.017 kb on - strand, within AO353_03750 at 803.069 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.088 kb on - strand at 803.088 kb on - strand at 803.190 kb on - strand at 803.190 kb on - strand at 803.220 kb on - strand at 803.278 kb on + strand at 803.279 kb on - strand at 803.338 kb on + strand at 803.379 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.414 kb on - strand at 803.525 kb on + strand at 803.525 kb on + strand at 803.598 kb on - strand at 803.616 kb on - strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.673 kb on - strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.772 kb on - strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.954 kb on + strand at 803.954 kb on + strand at 803.954 kb on + strand at 803.967 kb on + strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.981 kb on - strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.082 kb on + strand, within AO353_03760 at 804.082 kb on + strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.354 kb on + strand at 804.354 kb on + strand at 804.354 kb on + strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.382 kb on - strand at 804.382 kb on - strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.394 kb on - strand at 804.394 kb on - strand at 804.478 kb on + strand at 804.488 kb on + strand at 804.489 kb on - strand at 804.489 kb on - strand at 804.502 kb on + strand at 804.503 kb on - strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.524 kb on - strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.687 kb on - strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 805.077 kb on - strand at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.276 kb on + strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 803,017 - AO353_03750 0.85 +0.0 803,069 + AO353_03750 0.89 +0.7 803,087 + AO353_03750 0.90 +3.3 803,087 + AO353_03750 0.90 -0.4 803,087 + AO353_03750 0.90 -0.8 803,087 + AO353_03750 0.90 -1.8 803,087 + AO353_03750 0.90 +0.0 803,087 + AO353_03750 0.90 +1.9 803,087 + AO353_03750 0.90 -0.6 803,087 + AO353_03750 0.90 -0.2 803,088 - +1.0 803,088 - +1.0 803,190 - -0.1 803,190 - +0.3 803,220 - +0.1 803,278 + +0.0 803,279 - +0.6 803,338 + +0.6 803,379 + +0.4 803,385 + +0.0 803,385 + -0.2 803,385 + +2.0 803,385 + -2.1 803,385 + +1.0 803,386 - -0.7 803,386 - +1.6 803,386 - -0.8 803,386 - +0.1 803,386 - -0.2 803,386 - +1.0 803,386 - -1.0 803,386 - -1.1 803,386 - -1.0 803,386 - +0.8 803,413 + +0.6 803,413 + +1.0 803,413 + -0.6 803,413 + +1.2 803,413 + -0.6 803,414 - +1.0 803,525 + -0.2 803,525 + +1.0 803,598 - +0.2 803,616 - AO353_03755 0.13 +1.2 803,672 + AO353_03755 0.27 -1.5 803,672 + AO353_03755 0.27 -0.2 803,673 - AO353_03755 0.27 -1.8 803,705 + AO353_03755 0.35 +1.0 803,705 + AO353_03755 0.35 +1.3 803,705 + AO353_03755 0.35 -0.8 803,706 - AO353_03755 0.36 +0.3 803,706 - AO353_03755 0.36 +0.0 803,706 - AO353_03755 0.36 -1.2 803,706 - AO353_03755 0.36 +0.0 803,706 - AO353_03755 0.36 -0.1 803,706 - AO353_03755 0.36 +0.8 803,771 + AO353_03755 0.52 +1.1 803,771 + AO353_03755 0.52 -0.8 803,772 - AO353_03755 0.53 -0.6 803,777 + AO353_03755 0.54 +0.6 803,777 + AO353_03755 0.54 +0.2 803,777 + AO353_03755 0.54 +0.4 803,778 - AO353_03755 0.54 -1.6 803,778 - AO353_03755 0.54 +0.0 803,778 - AO353_03755 0.54 -0.1 803,778 - AO353_03755 0.54 -1.3 803,954 + +0.4 803,954 + +0.5 803,954 + +0.4 803,967 + +0.0 803,968 - +0.3 803,968 - -0.2 803,968 - +1.6 803,968 - +1.0 803,968 - -0.3 803,968 - -0.2 803,981 - -2.1 804,013 + -1.0 804,013 + -1.1 804,013 + +1.3 804,013 + -0.6 804,013 + -1.0 804,014 - +0.0 804,014 - -1.0 804,014 - -0.3 804,082 + AO353_03760 0.29 -0.8 804,082 + AO353_03760 0.29 -1.1 804,083 - AO353_03760 0.29 -3.0 804,083 - AO353_03760 0.29 +0.4 804,083 - AO353_03760 0.29 -1.3 804,218 + AO353_03760 0.66 +0.3 804,218 + AO353_03760 0.66 +1.0 804,218 + AO353_03760 0.66 -0.4 804,219 - AO353_03760 0.67 -1.3 804,219 - AO353_03760 0.67 -0.9 804,354 + -0.6 804,354 + -0.2 804,354 + +0.6 804,355 - +1.0 804,355 - -0.2 804,355 - +0.0 804,375 + -0.2 804,375 + -1.1 804,375 + +0.4 804,375 + +0.2 804,375 + +0.8 804,376 - +0.5 804,376 - -1.0 804,376 - +0.3 804,381 + -1.5 804,381 + +0.7 804,381 + +0.7 804,381 + +0.0 804,381 + -0.8 804,381 + +0.6 804,382 - +0.4 804,382 - -0.1 804,393 + -1.0 804,393 + +1.4 804,393 + -0.1 804,394 - -1.6 804,394 - -0.1 804,478 + -0.1 804,488 + +0.4 804,489 - +1.8 804,489 - -2.3 804,502 + +2.2 804,503 - -1.0 804,523 + -3.2 804,523 + -0.8 804,523 + -0.2 804,523 + -0.6 804,523 + -1.6 804,523 + -0.6 804,524 - +0.5 804,541 + +1.0 804,541 + -0.4 804,541 + +1.0 804,541 + +0.4 804,541 + +0.2 804,542 - +0.4 804,542 - +2.6 804,542 - -1.0 804,542 - +0.1 804,542 - -0.6 804,593 + +1.3 804,593 + +2.8 804,593 + -0.6 804,594 - +1.0 804,594 - +1.0 804,594 - -2.4 804,687 - AO353_03765 0.25 -0.9 804,722 + AO353_03765 0.35 +0.3 804,722 + AO353_03765 0.35 +2.0 804,722 + AO353_03765 0.35 -1.8 804,722 + AO353_03765 0.35 +1.2 804,722 + AO353_03765 0.35 +1.2 804,722 + AO353_03765 0.35 +1.6 804,723 - AO353_03765 0.35 -0.6 804,723 - AO353_03765 0.35 +0.5 804,743 + AO353_03765 0.40 -1.3 804,743 + AO353_03765 0.40 +0.3 804,743 + AO353_03765 0.40 -1.3 804,743 + AO353_03765 0.40 +0.0 804,743 + AO353_03765 0.40 -0.6 804,744 - AO353_03765 0.41 +2.6 804,744 - AO353_03765 0.41 -0.6 804,744 - AO353_03765 0.41 +0.5 804,744 - AO353_03765 0.41 -1.3 804,796 + AO353_03765 0.54 -0.1 804,796 + AO353_03765 0.54 +0.7 804,796 + AO353_03765 0.54 +1.0 804,796 + AO353_03765 0.54 -0.1 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 -2.1 804,796 + +0.4 804,796 + AO353_03765 0.54 +0.4 804,796 + AO353_03765 0.54 +1.3 804,796 + AO353_03765 0.54 -1.0 804,796 + AO353_03765 0.54 -1.0 804,796 + AO353_03765 0.54 +0.0 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 -0.4 804,796 + AO353_03765 0.54 -1.3 804,796 + AO353_03765 0.54 -0.7 804,797 - AO353_03765 0.55 -0.1 804,797 - AO353_03765 0.55 -0.6 804,797 - AO353_03765 0.55 +0.8 804,797 - AO353_03765 0.55 +0.8 804,797 - AO353_03765 0.55 -1.1 804,797 - AO353_03765 0.55 +0.3 804,797 - AO353_03765 0.55 +0.2 804,797 - AO353_03765 0.55 +1.0 804,797 - AO353_03765 0.55 -0.8 804,797 - AO353_03765 0.55 +0.3 804,797 - AO353_03765 0.55 -0.4 804,797 - AO353_03765 0.55 +2.0 804,797 - AO353_03765 0.55 -2.7 804,798 + AO353_03765 0.55 +2.0 804,798 + AO353_03765 0.55 -2.1 804,798 + AO353_03765 0.55 -1.0 804,798 + AO353_03765 0.55 -0.3 804,798 + AO353_03765 0.55 +0.6 804,798 + AO353_03765 0.55 +0.0 804,798 + AO353_03765 0.55 -1.3 804,799 - AO353_03765 0.55 -0.7 804,799 - AO353_03765 0.55 -0.2 804,799 - AO353_03765 0.55 +0.0 804,799 - AO353_03765 0.55 +0.3 804,799 - AO353_03765 0.55 -1.3 804,799 - AO353_03765 0.55 +0.3 804,800 + AO353_03765 0.55 +0.1 804,800 + AO353_03765 0.55 -1.3 804,801 - AO353_03765 0.56 +0.2 804,801 - AO353_03765 0.56 +0.7 804,801 - AO353_03765 0.56 +1.0 804,872 + AO353_03765 0.75 +0.4 804,872 + AO353_03765 0.75 +1.0 805,077 - +0.0 805,168 + AO353_03770 0.25 +0.5 805,168 + AO353_03770 0.25 +0.5 805,168 + AO353_03770 0.25 +1.4 805,169 - AO353_03770 0.25 +1.0 805,169 - AO353_03770 0.25 -0.8 805,169 - AO353_03770 0.25 +0.3 805,169 - AO353_03770 0.25 -0.1 805,276 + AO353_03770 0.61 +0.4 805,277 - AO353_03770 0.61 +0.0 805,277 - AO353_03770 0.61 -1.0 805,277 - AO353_03770 0.61 -0.5 805,277 - AO353_03770 0.61 -1.2 805,280 - AO353_03770 0.62 +1.2 805,280 - AO353_03770 0.62 +1.0
Or see this region's nucleotide sequence