Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02760

Experiment: Cholin acetate 38 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02750 and AO353_02755 are separated by 196 nucleotidesAO353_02755 and AO353_02760 are separated by 116 nucleotidesAO353_02760 and AO353_02765 overlap by 4 nucleotidesAO353_02765 and AO353_02770 are separated by 1 nucleotides AO353_02750: AO353_02750 - hypothetical protein, at 585,598 to 586,002 _02750 AO353_02755: AO353_02755 - peroxiredoxin, at 586,199 to 586,666 _02755 AO353_02760: AO353_02760 - arsenate reductase, at 586,783 to 587,136 _02760 AO353_02765: AO353_02765 - NAD(P)H-quinone oxidoreductase, at 587,133 to 587,729 _02765 AO353_02770: AO353_02770 - hypothetical protein, at 587,731 to 588,156 _02770 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 585.803 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 586.000 kb on + strandat 586.086 kb on + strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.124 kb on - strandat 586.124 kb on - strandat 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.510 kb on + strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.528 kb on - strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.569 kb on - strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.678 kb on + strandat 586.678 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.745 kb on + strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.746 kb on - strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.762 kb on + strandat 586.763 kb on - strandat 586.802 kb on - strandat 587.138 kb on + strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.139 kb on - strandat 587.145 kb on + strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.146 kb on - strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.160 kb on + strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.161 kb on - strandat 587.163 kb on + strandat 587.163 kb on + strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.164 kb on - strandat 587.314 kb on - strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.400 kb on + strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.401 kb on - strand, within AO353_02765at 587.566 kb on - strand, within AO353_02765at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.815 kb on + strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.816 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.835 kb on - strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.845 kb on + strand, within AO353_02770at 587.846 kb on - strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.848 kb on + strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.849 kb on - strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.989 kb on + strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 587.990 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.092 kb on - strand, within AO353_02770at 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.120 kb on + strandat 588.121 kb on - strandat 588.121 kb on - strandat 588.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 38 mM
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585,803 - AO353_02750 0.51 +0.2
585,915 - AO353_02750 0.78 +1.0
585,915 - AO353_02750 0.78 -1.0
585,915 - AO353_02750 0.78 +0.6
586,000 + +1.0
586,086 + -1.0
586,087 - +0.2
586,087 - -0.8
586,087 - +0.4
586,087 - +0.2
586,124 - -0.2
586,124 - -0.6
586,299 + AO353_02755 0.21 +0.6
586,299 + AO353_02755 0.21 -0.0
586,299 + AO353_02755 0.21 -0.1
586,299 + AO353_02755 0.21 -0.8
586,299 + AO353_02755 0.21 -1.0
586,299 + AO353_02755 0.21 +0.8
586,299 + AO353_02755 0.21 +2.0
586,299 + AO353_02755 0.21 -0.3
586,299 + AO353_02755 0.21 +0.6
586,299 + AO353_02755 0.21 -0.5
586,299 + AO353_02755 0.21 -0.5
586,299 + AO353_02755 0.21 +1.0
586,299 + AO353_02755 0.21 +0.4
586,299 + AO353_02755 0.21 -1.6
586,299 + AO353_02755 0.21 -0.2
586,299 + AO353_02755 0.21 -0.5
586,300 - AO353_02755 0.22 -0.6
586,300 - AO353_02755 0.22 +1.0
586,300 - AO353_02755 0.22 -0.0
586,300 - AO353_02755 0.22 +1.0
586,300 - AO353_02755 0.22 +0.6
586,300 - AO353_02755 0.22 +0.7
586,300 - AO353_02755 0.22 +2.0
586,300 - AO353_02755 0.22 +0.4
586,300 - AO353_02755 0.22 -0.0
586,300 - AO353_02755 0.22 +0.6
586,300 - AO353_02755 0.22 -0.1
586,300 - AO353_02755 0.22 +1.7
586,300 - AO353_02755 0.22 -1.2
586,300 - AO353_02755 0.22 -0.1
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 -0.0
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 +0.8
586,300 - AO353_02755 0.22 -1.0
586,300 - AO353_02755 0.22 +0.8
586,300 - AO353_02755 0.22 -0.1
586,300 - AO353_02755 0.22 -1.6
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 +0.6
586,510 + AO353_02755 0.66 -0.6
586,511 - AO353_02755 0.67 +1.6
586,511 - AO353_02755 0.67 -0.7
586,527 + AO353_02755 0.70 -0.3
586,527 + AO353_02755 0.70 -0.0
586,527 + AO353_02755 0.70 +1.6
586,527 + AO353_02755 0.70 +1.1
586,528 - AO353_02755 0.70 +1.4
586,531 + AO353_02755 0.71 -0.0
586,531 + AO353_02755 0.71 -0.7
586,531 + AO353_02755 0.71 +0.7
586,531 + AO353_02755 0.71 +1.1
586,531 + AO353_02755 0.71 -2.5
586,531 + AO353_02755 0.71 -0.3
586,532 - AO353_02755 0.71 +1.2
586,532 - AO353_02755 0.71 -0.0
586,532 - AO353_02755 0.71 +1.3
586,532 - AO353_02755 0.71 +2.0
586,532 - AO353_02755 0.71 +2.1
586,569 - AO353_02755 0.79 -0.0
586,596 + AO353_02755 0.85 +0.7
586,596 + AO353_02755 0.85 -0.0
586,597 - AO353_02755 0.85 +0.1
586,597 - AO353_02755 0.85 -0.6
586,678 + +1.0
586,678 + +0.1
586,745 + -2.0
586,745 + +0.1
586,745 + +1.0
586,745 + +0.4
586,745 + +0.7
586,745 + -0.9
586,745 + +1.5
586,746 - +0.8
586,746 - +0.4
586,746 - -1.0
586,746 - -0.8
586,746 - -0.4
586,762 + +1.0
586,762 + -1.6
586,762 + -0.0
586,763 - +2.2
586,802 - -1.0
587,138 + +0.4
587,139 - +0.7
587,139 - -3.1
587,139 - -1.8
587,145 + +0.7
587,146 - +0.2
587,146 - +1.0
587,146 - -0.4
587,160 + -0.2
587,160 + -0.4
587,160 + +0.6
587,160 + -2.5
587,161 - -0.6
587,161 - +0.0
587,161 - -0.0
587,161 - +1.0
587,163 + -0.8
587,163 + -1.0
587,164 - -0.6
587,164 - +0.6
587,164 - +0.4
587,164 - +2.3
587,314 - AO353_02765 0.30 -0.6
587,400 + AO353_02765 0.45 -1.2
587,400 + AO353_02765 0.45 +0.3
587,400 + AO353_02765 0.45 -0.6
587,401 - AO353_02765 0.45 -0.2
587,401 - AO353_02765 0.45 +1.6
587,401 - AO353_02765 0.45 -1.1
587,566 - AO353_02765 0.73 +0.2
587,815 + AO353_02770 0.20 +2.6
587,815 + AO353_02770 0.20 +0.3
587,815 + AO353_02770 0.20 -1.0
587,816 - AO353_02770 0.20 +0.6
587,816 - AO353_02770 0.20 -0.8
587,816 - AO353_02770 0.20 -0.3
587,816 - AO353_02770 0.20 -0.6
587,816 - AO353_02770 0.20 +2.1
587,816 - AO353_02770 0.20 -0.6
587,835 - AO353_02770 0.24 -2.6
587,835 - AO353_02770 0.24 -0.0
587,845 + AO353_02770 0.27 +0.5
587,845 + AO353_02770 0.27 -0.3
587,845 + AO353_02770 0.27 -1.2
587,845 + AO353_02770 0.27 +2.1
587,845 + AO353_02770 0.27 +0.7
587,846 - AO353_02770 0.27 -0.5
587,848 + AO353_02770 0.27 +1.7
587,848 + AO353_02770 0.27 -0.9
587,848 + AO353_02770 0.27 +0.6
587,848 + AO353_02770 0.27 -1.0
587,848 + AO353_02770 0.27 +0.5
587,848 + AO353_02770 0.27 +0.3
587,849 - AO353_02770 0.28 -0.3
587,849 - AO353_02770 0.28 +0.6
587,849 - AO353_02770 0.28 +0.7
587,849 - AO353_02770 0.28 +1.7
587,849 - AO353_02770 0.28 -1.1
587,989 + AO353_02770 0.61 -0.2
587,989 + AO353_02770 0.61 +1.3
587,989 + AO353_02770 0.61 +0.4
587,989 + AO353_02770 0.61 -0.0
587,989 + AO353_02770 0.61 -1.6
587,990 - AO353_02770 0.61 -0.3
587,990 - AO353_02770 0.61 -0.4
587,990 - AO353_02770 0.61 +1.5
588,092 - AO353_02770 0.85 +0.4
588,092 - AO353_02770 0.85 -1.4
588,092 - AO353_02770 0.85 -0.4
588,092 - AO353_02770 0.85 -1.6
588,092 - AO353_02770 0.85 +0.6
588,092 - AO353_02770 0.85 +1.4
588,092 - AO353_02770 0.85 +1.0
588,092 - AO353_02770 0.85 -2.0
588,092 - AO353_02770 0.85 +2.0
588,092 - AO353_02770 0.85 +0.3
588,092 - AO353_02770 0.85 -0.5
588,120 + +2.0
588,120 + -0.5
588,120 + -0.6
588,120 + -0.0
588,121 - +1.5
588,121 - -0.5
588,121 - -1.9

Or see this region's nucleotide sequence