Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02535 and AO353_02540 are separated by 106 nucleotides AO353_02540 and AO353_02545 are separated by 84 nucleotides AO353_02545 and AO353_02550 are separated by 91 nucleotides AO353_02550 and AO353_02555 are separated by 140 nucleotides
AO353_02535: AO353_02535 - C4-dicarboxylate ABC transporter, at 540,110 to 541,261
_02535
AO353_02540: AO353_02540 - cupin, at 541,368 to 541,679
_02540
AO353_02545: AO353_02545 - MFS transporter, at 541,764 to 542,948
_02545
AO353_02550: AO353_02550 - TetR family transcriptional regulator, at 543,040 to 543,579
_02550
AO353_02555: AO353_02555 - histidine kinase, at 543,720 to 547,190
_02555
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 540.810 kb on + strand, within AO353_02535 at 540.811 kb on - strand, within AO353_02535 at 540.811 kb on - strand at 540.811 kb on - strand, within AO353_02535 at 540.811 kb on - strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.032 kb on + strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.033 kb on - strand, within AO353_02535 at 541.063 kb on + strand, within AO353_02535 at 541.063 kb on + strand, within AO353_02535 at 541.063 kb on + strand, within AO353_02535 at 541.063 kb on + strand, within AO353_02535 at 541.064 kb on - strand, within AO353_02535 at 541.064 kb on - strand, within AO353_02535 at 541.064 kb on - strand, within AO353_02535 at 541.064 kb on - strand, within AO353_02535 at 541.211 kb on + strand at 541.211 kb on + strand at 541.211 kb on + strand at 541.211 kb on + strand at 541.211 kb on + strand at 541.211 kb on + strand at 541.211 kb on + strand at 541.212 kb on - strand at 541.212 kb on - strand at 541.212 kb on - strand at 541.212 kb on - strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.287 kb on + strand at 541.288 kb on - strand at 541.288 kb on - strand at 541.288 kb on - strand at 541.288 kb on - strand at 541.288 kb on - strand at 541.299 kb on + strand at 541.319 kb on - strand at 541.370 kb on - strand at 541.450 kb on + strand, within AO353_02540 at 541.450 kb on + strand, within AO353_02540 at 541.450 kb on + strand, within AO353_02540 at 541.450 kb on + strand, within AO353_02540 at 541.450 kb on + strand, within AO353_02540 at 541.450 kb on + strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.451 kb on - strand, within AO353_02540 at 541.570 kb on + strand, within AO353_02540 at 541.570 kb on + strand, within AO353_02540 at 541.571 kb on - strand, within AO353_02540 at 541.699 kb on + strand at 541.700 kb on - strand at 541.714 kb on + strand at 541.733 kb on - strand at 541.765 kb on + strand at 541.765 kb on + strand at 541.766 kb on - strand at 541.766 kb on - strand at 541.766 kb on - strand at 541.766 kb on - strand at 541.766 kb on - strand at 541.925 kb on - strand, within AO353_02545 at 541.936 kb on + strand, within AO353_02545 at 541.936 kb on + strand, within AO353_02545 at 541.937 kb on - strand, within AO353_02545 at 542.077 kb on - strand, within AO353_02545 at 542.077 kb on - strand, within AO353_02545 at 542.199 kb on + strand, within AO353_02545 at 542.199 kb on + strand, within AO353_02545 at 542.199 kb on + strand, within AO353_02545 at 542.243 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.352 kb on + strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.353 kb on - strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.419 kb on + strand, within AO353_02545 at 542.420 kb on - strand, within AO353_02545 at 542.485 kb on + strand, within AO353_02545 at 542.486 kb on - strand, within AO353_02545 at 542.546 kb on + strand, within AO353_02545 at 542.598 kb on + strand, within AO353_02545 at 542.599 kb on - strand, within AO353_02545 at 542.599 kb on - strand, within AO353_02545 at 542.599 kb on - strand, within AO353_02545 at 542.599 kb on - strand, within AO353_02545 at 542.675 kb on + strand, within AO353_02545 at 542.696 kb on + strand, within AO353_02545 at 542.697 kb on - strand, within AO353_02545 at 542.722 kb on - strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.791 kb on + strand, within AO353_02545 at 542.792 kb on - strand, within AO353_02545 at 542.792 kb on - strand, within AO353_02545 at 542.846 kb on - strand at 542.854 kb on + strand at 542.855 kb on - strand at 542.855 kb on - strand at 542.855 kb on - strand at 542.895 kb on + strand at 542.895 kb on + strand at 542.895 kb on + strand at 543.046 kb on - strand at 543.048 kb on + strand at 543.048 kb on + strand at 543.048 kb on + strand at 543.048 kb on + strand at 543.048 kb on + strand at 543.048 kb on + strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.049 kb on - strand at 543.060 kb on - strand at 543.076 kb on - strand at 543.196 kb on + strand, within AO353_02550 at 543.319 kb on + strand, within AO353_02550 at 543.320 kb on - strand, within AO353_02550 at 543.320 kb on - strand, within AO353_02550 at 543.320 kb on - strand, within AO353_02550 at 543.320 kb on - strand, within AO353_02550 at 543.320 kb on - strand, within AO353_02550 at 543.392 kb on - strand, within AO353_02550 at 543.392 kb on - strand, within AO353_02550 at 543.429 kb on - strand, within AO353_02550 at 543.597 kb on + strand at 543.597 kb on + strand at 543.597 kb on + strand at 543.597 kb on + strand at 543.597 kb on + strand at 543.598 kb on - strand at 543.598 kb on - strand at 543.598 kb on - strand at 543.598 kb on - strand at 543.601 kb on + strand at 543.601 kb on + strand at 543.601 kb on + strand at 543.601 kb on + strand at 543.601 kb on + strand at 543.601 kb on + strand at 543.602 kb on - strand at 543.602 kb on - strand at 543.602 kb on - strand at 543.704 kb on + strand at 543.705 kb on - strand at 543.705 kb on - strand at 543.716 kb on + strand at 543.716 kb on + strand at 543.716 kb on + strand at 543.716 kb on + strand at 543.716 kb on + strand at 543.717 kb on - strand at 543.717 kb on - strand at 543.717 kb on - strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.762 kb on + strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.763 kb on - strand at 543.764 kb on + strand at 543.765 kb on - strand at 543.792 kb on + strand at 543.843 kb on + strand at 543.843 kb on + strand at 543.843 kb on + strand at 543.843 kb on + strand at 543.843 kb on + strand at 543.844 kb on - strand at 543.844 kb on - strand at 543.844 kb on - strand at 543.844 kb on - strand at 543.844 kb on - strand at 543.844 kb on - strand at 543.864 kb on + strand at 543.864 kb on + strand at 543.865 kb on - strand at 543.865 kb on - strand at 543.936 kb on + strand at 543.936 kb on + strand at 543.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 540,810 + AO353_02535 0.61 +1.0 540,811 - AO353_02535 0.61 +0.4 540,811 - -1.0 540,811 - AO353_02535 0.61 +0.4 540,811 - AO353_02535 0.61 +4.3 541,032 + AO353_02535 0.80 -0.0 541,032 + AO353_02535 0.80 -0.4 541,032 + AO353_02535 0.80 -0.9 541,032 + AO353_02535 0.80 -0.1 541,032 + AO353_02535 0.80 -0.6 541,032 + AO353_02535 0.80 -0.5 541,032 + AO353_02535 0.80 -0.8 541,033 - AO353_02535 0.80 -0.4 541,033 - AO353_02535 0.80 -0.8 541,033 - AO353_02535 0.80 +0.6 541,033 - AO353_02535 0.80 -2.0 541,033 - AO353_02535 0.80 -1.6 541,033 - AO353_02535 0.80 -1.4 541,033 - AO353_02535 0.80 -0.0 541,033 - AO353_02535 0.80 -0.7 541,033 - AO353_02535 0.80 +1.4 541,063 + AO353_02535 0.83 +0.2 541,063 + AO353_02535 0.83 +0.4 541,063 + AO353_02535 0.83 +1.3 541,063 + AO353_02535 0.83 +0.8 541,064 - AO353_02535 0.83 +1.1 541,064 - AO353_02535 0.83 -1.7 541,064 - AO353_02535 0.83 -1.8 541,064 - AO353_02535 0.83 -0.0 541,211 + +0.3 541,211 + -1.8 541,211 + +0.6 541,211 + +0.4 541,211 + -0.1 541,211 + +1.0 541,211 + -1.0 541,212 - -1.4 541,212 - +0.4 541,212 - +0.2 541,212 - +0.2 541,287 + -0.0 541,287 + -2.0 541,287 + +1.0 541,287 + -0.8 541,287 + +1.0 541,287 + -0.0 541,287 + -0.4 541,287 + -0.2 541,288 - +0.3 541,288 - -0.0 541,288 - -0.3 541,288 - -1.0 541,288 - +1.2 541,299 + -0.4 541,319 - -0.4 541,370 - +0.2 541,450 + AO353_02540 0.26 +1.0 541,450 + AO353_02540 0.26 +0.7 541,450 + AO353_02540 0.26 +0.6 541,450 + AO353_02540 0.26 -0.8 541,450 + AO353_02540 0.26 +0.2 541,450 + AO353_02540 0.26 -2.7 541,451 - AO353_02540 0.27 +0.3 541,451 - AO353_02540 0.27 +0.8 541,451 - AO353_02540 0.27 +0.2 541,451 - AO353_02540 0.27 +0.2 541,451 - AO353_02540 0.27 -0.2 541,451 - AO353_02540 0.27 -0.2 541,451 - AO353_02540 0.27 +1.0 541,451 - AO353_02540 0.27 +0.8 541,451 - AO353_02540 0.27 +1.2 541,451 - AO353_02540 0.27 -1.0 541,451 - AO353_02540 0.27 -0.0 541,451 - AO353_02540 0.27 +0.1 541,570 + AO353_02540 0.65 +0.4 541,570 + AO353_02540 0.65 +0.6 541,571 - AO353_02540 0.65 -0.6 541,699 + -0.2 541,700 - -3.1 541,714 + +0.4 541,733 - +0.1 541,765 + -1.4 541,765 + +1.0 541,766 - +0.8 541,766 - -0.0 541,766 - +1.0 541,766 - -1.6 541,766 - +1.3 541,925 - AO353_02545 0.14 +1.0 541,936 + AO353_02545 0.15 +1.0 541,936 + AO353_02545 0.15 -0.2 541,937 - AO353_02545 0.15 -0.6 542,077 - AO353_02545 0.26 -0.6 542,077 - AO353_02545 0.26 -1.4 542,199 + AO353_02545 0.37 -0.0 542,199 + AO353_02545 0.37 +0.8 542,199 + AO353_02545 0.37 +2.3 542,243 + AO353_02545 0.40 +2.3 542,352 + AO353_02545 0.50 +1.0 542,352 + AO353_02545 0.50 +0.5 542,352 + AO353_02545 0.50 +0.2 542,352 + AO353_02545 0.50 +0.2 542,352 + AO353_02545 0.50 +0.4 542,352 + AO353_02545 0.50 -1.4 542,352 + AO353_02545 0.50 +1.3 542,352 + AO353_02545 0.50 -0.4 542,352 + AO353_02545 0.50 +0.4 542,352 + AO353_02545 0.50 +0.0 542,352 + AO353_02545 0.50 +0.9 542,352 + AO353_02545 0.50 +0.8 542,352 + AO353_02545 0.50 -1.6 542,352 + AO353_02545 0.50 +4.3 542,353 - AO353_02545 0.50 +1.0 542,353 - AO353_02545 0.50 -1.0 542,353 - AO353_02545 0.50 +1.1 542,353 - AO353_02545 0.50 +1.6 542,353 - AO353_02545 0.50 -0.4 542,353 - AO353_02545 0.50 +0.4 542,353 - AO353_02545 0.50 -0.1 542,353 - AO353_02545 0.50 +1.2 542,353 - AO353_02545 0.50 +1.0 542,353 - AO353_02545 0.50 -0.7 542,353 - AO353_02545 0.50 +0.4 542,353 - AO353_02545 0.50 +0.4 542,419 + AO353_02545 0.55 +0.6 542,419 + AO353_02545 0.55 +0.4 542,419 + AO353_02545 0.55 -1.6 542,419 + AO353_02545 0.55 +1.0 542,419 + AO353_02545 0.55 +0.6 542,419 + AO353_02545 0.55 +0.7 542,419 + AO353_02545 0.55 -0.6 542,420 - AO353_02545 0.55 -1.0 542,485 + AO353_02545 0.61 +1.0 542,486 - AO353_02545 0.61 -0.3 542,546 + AO353_02545 0.66 +1.0 542,598 + AO353_02545 0.70 +0.5 542,599 - AO353_02545 0.70 +1.1 542,599 - AO353_02545 0.70 -0.6 542,599 - AO353_02545 0.70 -0.2 542,599 - AO353_02545 0.70 -1.2 542,675 + AO353_02545 0.77 +1.6 542,696 + AO353_02545 0.79 +2.1 542,697 - AO353_02545 0.79 -0.0 542,722 - AO353_02545 0.81 -0.4 542,791 + AO353_02545 0.87 +2.6 542,791 + AO353_02545 0.87 +2.5 542,791 + AO353_02545 0.87 +1.3 542,791 + AO353_02545 0.87 -0.4 542,791 + AO353_02545 0.87 +1.2 542,791 + AO353_02545 0.87 -0.1 542,791 + AO353_02545 0.87 -0.2 542,791 + AO353_02545 0.87 +1.6 542,791 + AO353_02545 0.87 +1.3 542,791 + AO353_02545 0.87 +2.1 542,791 + AO353_02545 0.87 +1.3 542,791 + AO353_02545 0.87 +2.4 542,791 + AO353_02545 0.87 +0.4 542,792 - AO353_02545 0.87 +1.0 542,792 - AO353_02545 0.87 -1.6 542,846 - +0.2 542,854 + +0.4 542,855 - +2.0 542,855 - +1.0 542,855 - +0.1 542,895 + +2.2 542,895 + +2.0 542,895 + +3.4 543,046 - -0.3 543,048 + +2.0 543,048 + +0.1 543,048 + -0.3 543,048 + +1.5 543,048 + +0.8 543,048 + -2.2 543,049 - +1.0 543,049 - +2.0 543,049 - -0.6 543,049 - +1.0 543,049 - +0.2 543,049 - +0.5 543,049 - +1.5 543,049 - -1.0 543,049 - +1.4 543,049 - +2.0 543,060 - +1.0 543,076 - -0.6 543,196 + AO353_02550 0.29 +1.1 543,319 + AO353_02550 0.52 +1.0 543,320 - AO353_02550 0.52 +0.8 543,320 - AO353_02550 0.52 +0.6 543,320 - AO353_02550 0.52 +1.4 543,320 - AO353_02550 0.52 -0.3 543,320 - AO353_02550 0.52 +0.1 543,392 - AO353_02550 0.65 +1.7 543,392 - AO353_02550 0.65 +0.4 543,429 - AO353_02550 0.72 +0.6 543,597 + -0.4 543,597 + +0.3 543,597 + +0.5 543,597 + -0.0 543,597 + +1.5 543,598 - +0.4 543,598 - +0.6 543,598 - -2.0 543,598 - +0.4 543,601 + -0.0 543,601 + -0.5 543,601 + +1.0 543,601 + -1.4 543,601 + +2.6 543,601 + -0.6 543,602 - +1.0 543,602 - -0.6 543,602 - +0.4 543,704 + -0.6 543,705 - +2.9 543,705 - -0.0 543,716 + -1.0 543,716 + +0.4 543,716 + -1.0 543,716 + +2.2 543,716 + -0.0 543,717 - +1.6 543,717 - +0.8 543,717 - +0.6 543,762 + -1.2 543,762 + -1.0 543,762 + -0.0 543,762 + +0.8 543,762 + +0.8 543,762 + +0.1 543,762 + +1.0 543,762 + +0.4 543,762 + -1.8 543,762 + +2.3 543,763 - +1.0 543,763 - -2.2 543,763 - +1.0 543,763 - -0.2 543,763 - -0.6 543,763 - -2.0 543,763 - -0.0 543,763 - +1.0 543,763 - -0.8 543,763 - -1.0 543,763 - -0.3 543,763 - +2.0 543,763 - +1.4 543,764 + +1.0 543,765 - -0.0 543,792 + +1.1 543,843 + +1.1 543,843 + +1.3 543,843 + +0.7 543,843 + +1.2 543,843 + -0.6 543,844 - +1.0 543,844 - -0.4 543,844 - +1.0 543,844 - -1.6 543,844 - +0.7 543,844 - +1.0 543,864 + +0.3 543,864 + +0.2 543,865 - +0.4 543,865 - +0.2 543,936 + +0.6 543,936 + +0.1 543,937 - -1.8
Or see this region's nucleotide sequence