Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02125 and AO353_02130 overlap by 8 nucleotides AO353_02130 and AO353_02135 are separated by 3 nucleotides
AO353_02125: AO353_02125 - ABC transporter ATP-binding protein, at 456,219 to 458,036
_02125
AO353_02130: AO353_02130 - disulfide bond formation protein DsbA, at 458,029 to 458,664
_02130
AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609
_02135
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.042 kb on + strand, within AO353_02125 at 457.042 kb on + strand, within AO353_02125 at 457.042 kb on + strand, within AO353_02125 at 457.042 kb on + strand, within AO353_02125 at 457.043 kb on - strand, within AO353_02125 at 457.043 kb on - strand, within AO353_02125 at 457.043 kb on - strand, within AO353_02125 at 457.048 kb on + strand, within AO353_02125 at 457.048 kb on + strand, within AO353_02125 at 457.049 kb on - strand, within AO353_02125 at 457.049 kb on - strand, within AO353_02125 at 457.096 kb on + strand, within AO353_02125 at 457.096 kb on + strand, within AO353_02125 at 457.096 kb on + strand, within AO353_02125 at 457.096 kb on + strand, within AO353_02125 at 457.097 kb on - strand, within AO353_02125 at 457.172 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.246 kb on + strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.247 kb on - strand, within AO353_02125 at 457.426 kb on + strand, within AO353_02125 at 457.426 kb on + strand, within AO353_02125 at 457.426 kb on + strand, within AO353_02125 at 457.426 kb on + strand, within AO353_02125 at 457.427 kb on - strand, within AO353_02125 at 457.427 kb on - strand, within AO353_02125 at 457.427 kb on - strand, within AO353_02125 at 457.535 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.634 kb on + strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.635 kb on - strand, within AO353_02125 at 457.777 kb on + strand, within AO353_02125 at 457.778 kb on - strand, within AO353_02125 at 457.881 kb on + strand at 457.881 kb on + strand at 457.881 kb on + strand at 457.881 kb on + strand at 457.882 kb on - strand at 457.915 kb on - strand at 457.915 kb on - strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.032 kb on + strand at 458.033 kb on - strand at 458.033 kb on - strand at 458.033 kb on - strand at 458.309 kb on + strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.310 kb on - strand, within AO353_02130 at 458.406 kb on - strand, within AO353_02130 at 458.406 kb on - strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.489 kb on + strand, within AO353_02130 at 458.490 kb on - strand, within AO353_02130 at 458.490 kb on - strand, within AO353_02130 at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.641 kb on + strand at 458.642 kb on - strand at 458.642 kb on - strand at 458.642 kb on - strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.645 kb on + strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.646 kb on - strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.693 kb on + strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.694 kb on - strand at 458.699 kb on + strand at 458.700 kb on - strand at 458.790 kb on + strand, within AO353_02135 at 458.791 kb on - strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.825 kb on + strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.826 kb on - strand, within AO353_02135 at 458.886 kb on - strand, within AO353_02135 at 458.886 kb on - strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.984 kb on + strand, within AO353_02135 at 458.985 kb on - strand, within AO353_02135 at 458.985 kb on - strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.041 kb on + strand, within AO353_02135 at 459.042 kb on - strand, within AO353_02135 at 459.042 kb on - strand, within AO353_02135 at 459.128 kb on + strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.554 kb on + strand at 459.554 kb on + strand at 459.554 kb on + strand at 459.555 kb on - strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 457,042 + AO353_02125 0.45 -0.9 457,042 + AO353_02125 0.45 +0.3 457,042 + AO353_02125 0.45 -0.1 457,042 + AO353_02125 0.45 +0.9 457,043 - AO353_02125 0.45 -1.4 457,043 - AO353_02125 0.45 -1.7 457,043 - AO353_02125 0.45 -0.7 457,048 + AO353_02125 0.46 -0.1 457,048 + AO353_02125 0.46 +1.7 457,049 - AO353_02125 0.46 -0.1 457,049 - AO353_02125 0.46 -0.1 457,096 + AO353_02125 0.48 +1.9 457,096 + AO353_02125 0.48 +0.8 457,096 + AO353_02125 0.48 +0.9 457,096 + AO353_02125 0.48 +0.3 457,097 - AO353_02125 0.48 +0.1 457,172 + AO353_02125 0.52 +0.6 457,246 + AO353_02125 0.56 -0.5 457,246 + AO353_02125 0.56 +1.1 457,246 + AO353_02125 0.56 +0.3 457,246 + AO353_02125 0.56 +0.2 457,246 + AO353_02125 0.56 +1.7 457,246 + AO353_02125 0.56 -1.1 457,246 + AO353_02125 0.56 +2.2 457,246 + AO353_02125 0.56 -0.7 457,246 + AO353_02125 0.56 +0.9 457,247 - AO353_02125 0.57 -0.7 457,247 - AO353_02125 0.57 -0.1 457,247 - AO353_02125 0.57 -1.6 457,247 - AO353_02125 0.57 +0.9 457,247 - AO353_02125 0.57 -0.8 457,247 - AO353_02125 0.57 -0.8 457,247 - AO353_02125 0.57 -0.3 457,247 - AO353_02125 0.57 -0.9 457,247 - AO353_02125 0.57 -0.8 457,426 + AO353_02125 0.66 +0.9 457,426 + AO353_02125 0.66 -2.9 457,426 + AO353_02125 0.66 -0.1 457,426 + AO353_02125 0.66 +0.4 457,427 - AO353_02125 0.66 -0.2 457,427 - AO353_02125 0.66 -0.5 457,427 - AO353_02125 0.66 +0.3 457,535 + AO353_02125 0.72 -0.2 457,634 + AO353_02125 0.78 +0.3 457,634 + AO353_02125 0.78 -1.4 457,634 + AO353_02125 0.78 -0.2 457,634 + AO353_02125 0.78 +2.7 457,634 + AO353_02125 0.78 -0.1 457,634 + AO353_02125 0.78 -0.1 457,635 - AO353_02125 0.78 +0.3 457,635 - AO353_02125 0.78 -1.7 457,635 - AO353_02125 0.78 -0.7 457,635 - AO353_02125 0.78 +0.8 457,635 - AO353_02125 0.78 -1.7 457,635 - AO353_02125 0.78 -2.5 457,635 - AO353_02125 0.78 -1.4 457,635 - AO353_02125 0.78 +0.2 457,777 + AO353_02125 0.86 +0.8 457,778 - AO353_02125 0.86 -1.3 457,881 + +0.3 457,881 + +0.7 457,881 + +1.3 457,881 + -0.2 457,882 - -1.2 457,915 - +0.6 457,915 - -0.1 458,032 + +1.7 458,032 + -0.1 458,032 + +1.9 458,032 + -1.2 458,032 + -1.1 458,032 + -1.1 458,033 - +0.9 458,033 - +0.5 458,033 - -0.9 458,309 + AO353_02130 0.44 -2.1 458,310 - AO353_02130 0.44 +0.6 458,310 - AO353_02130 0.44 -0.7 458,310 - AO353_02130 0.44 -0.7 458,310 - AO353_02130 0.44 +1.8 458,310 - AO353_02130 0.44 -0.1 458,310 - AO353_02130 0.44 +0.1 458,406 - AO353_02130 0.59 +2.5 458,406 - AO353_02130 0.59 +1.1 458,489 + AO353_02130 0.72 +0.6 458,489 + AO353_02130 0.72 -2.2 458,489 + AO353_02130 0.72 +1.4 458,489 + AO353_02130 0.72 +1.5 458,489 + AO353_02130 0.72 +0.6 458,490 - AO353_02130 0.72 +0.1 458,490 - AO353_02130 0.72 +0.5 458,641 + +0.3 458,641 + +2.5 458,641 + -0.3 458,641 + -0.9 458,641 + +1.4 458,641 + -1.1 458,641 + -0.8 458,642 - +0.9 458,642 - +0.8 458,642 - +1.3 458,645 + -1.2 458,645 + -0.1 458,645 + -0.4 458,645 + +2.1 458,645 + -0.1 458,645 + +0.7 458,646 - +1.2 458,646 - +0.5 458,646 - +0.9 458,646 - +1.9 458,646 - +0.1 458,646 - +0.6 458,646 - -0.1 458,646 - +0.7 458,646 - +0.3 458,646 - -0.1 458,646 - +0.1 458,646 - +0.3 458,693 + +0.9 458,693 + -2.2 458,693 + +3.2 458,693 + +1.3 458,693 + +1.2 458,693 + +2.9 458,693 + -0.3 458,693 + -1.1 458,693 + -0.8 458,693 + -0.1 458,693 + +0.3 458,693 + +0.2 458,694 - +0.1 458,694 - +0.3 458,694 - -1.9 458,694 - -0.6 458,694 - +0.9 458,699 + -1.4 458,700 - -0.1 458,790 + AO353_02135 0.13 -0.1 458,791 - AO353_02135 0.13 -0.8 458,825 + AO353_02135 0.17 -0.4 458,825 + AO353_02135 0.17 +1.4 458,825 + AO353_02135 0.17 +1.2 458,825 + AO353_02135 0.17 +0.4 458,825 + AO353_02135 0.17 +0.3 458,825 + AO353_02135 0.17 -1.2 458,825 + AO353_02135 0.17 +0.9 458,825 + AO353_02135 0.17 +0.3 458,825 + AO353_02135 0.17 +0.3 458,825 + AO353_02135 0.17 -1.1 458,825 + AO353_02135 0.17 +0.7 458,825 + AO353_02135 0.17 -0.1 458,826 - AO353_02135 0.17 +1.3 458,826 - AO353_02135 0.17 +0.1 458,826 - AO353_02135 0.17 -1.0 458,826 - AO353_02135 0.17 -1.7 458,886 - AO353_02135 0.23 +0.3 458,886 - AO353_02135 0.23 -0.1 458,984 + AO353_02135 0.34 -0.9 458,984 + AO353_02135 0.34 -0.1 458,984 + AO353_02135 0.34 -0.2 458,985 - AO353_02135 0.34 -2.2 458,985 - AO353_02135 0.34 -0.2 459,041 + AO353_02135 0.40 +1.7 459,041 + AO353_02135 0.40 -0.1 459,041 + AO353_02135 0.40 +0.7 459,041 + AO353_02135 0.40 +1.1 459,042 - AO353_02135 0.40 -0.5 459,042 - AO353_02135 0.40 +0.9 459,128 + AO353_02135 0.49 +2.2 459,201 - AO353_02135 0.57 +0.4 459,201 - AO353_02135 0.57 +1.9 459,201 - AO353_02135 0.57 +0.6 459,272 + AO353_02135 0.64 -0.6 459,272 + AO353_02135 0.64 -0.3 459,272 + AO353_02135 0.64 -1.0 459,272 + AO353_02135 0.64 -0.1 459,272 + AO353_02135 0.64 +0.9 459,272 + AO353_02135 0.64 +0.3 459,272 + AO353_02135 0.64 +0.3 459,272 + AO353_02135 0.64 +0.3 459,273 - AO353_02135 0.64 -1.1 459,273 - AO353_02135 0.64 -0.3 459,273 - AO353_02135 0.64 +0.3 459,273 - AO353_02135 0.64 +1.5 459,273 - AO353_02135 0.64 -0.1 459,273 - AO353_02135 0.64 +0.0 459,273 - AO353_02135 0.64 -0.4 459,273 - AO353_02135 0.64 +0.9 459,273 - AO353_02135 0.64 +1.5 459,273 - AO353_02135 0.64 -2.1 459,273 - AO353_02135 0.64 -0.2 459,273 - AO353_02135 0.64 +0.5 459,374 + AO353_02135 0.75 +0.4 459,374 + AO353_02135 0.75 +0.7 459,374 + AO353_02135 0.75 -2.2 459,554 + -0.8 459,554 + -1.7 459,554 + -0.1 459,555 - -1.7 459,576 + +1.1 459,576 + -0.2 459,576 + -0.7 459,576 + +0.1 459,576 + +0.9 459,576 + -0.8 459,576 + +1.1 459,577 - -0.1 459,577 - +1.3 459,577 - -1.4 459,577 - -0.4 459,577 - +1.7 459,577 - +0.7 459,577 - -1.4 459,577 - +1.3 459,577 - -0.1 459,577 - +0.3 459,577 - +0.9 459,577 - -0.1 459,577 - -0.8 459,578 + -0.4 459,578 + +0.8 459,578 + +0.9 459,578 + +0.3 459,578 + +0.5 459,578 + +0.8 459,578 + -0.1 459,578 + -1.1 459,578 + -0.1 459,578 + -0.4 459,578 + +0.9 459,578 + +0.1 459,578 + +2.3 459,578 + +0.3 459,579 - -1.9 459,579 - -1.1 459,579 - -0.1 459,579 - -1.7
Or see this region's nucleotide sequence