Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01890 and AO353_01895 overlap by 8 nucleotides AO353_01895 and AO353_01900 are separated by 99 nucleotides AO353_01900 and AO353_01905 are separated by 132 nucleotides AO353_01905 and AO353_01910 are separated by 72 nucleotides
AO353_01890: AO353_01890 - serine/threonine protein kinase, at 399,316 to 400,614
_01890
AO353_01895: AO353_01895 - ABC transporter, at 400,607 to 401,398
_01895
AO353_01900: AO353_01900 - hypothetical protein, at 401,498 to 402,412
_01900
AO353_01905: AO353_01905 - TetR family transcriptional regulator, at 402,545 to 403,150
_01905
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 400.570 kb on + strand at 400.571 kb on - strand at 400.612 kb on + strand at 400.613 kb on - strand at 400.629 kb on + strand at 400.630 kb on - strand at 400.799 kb on + strand, within AO353_01895 at 400.799 kb on + strand, within AO353_01895 at 400.799 kb on + strand, within AO353_01895 at 400.799 kb on + strand, within AO353_01895 at 400.799 kb on + strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.800 kb on - strand, within AO353_01895 at 400.832 kb on + strand, within AO353_01895 at 400.844 kb on + strand, within AO353_01895 at 400.844 kb on + strand, within AO353_01895 at 400.845 kb on - strand, within AO353_01895 at 400.845 kb on - strand, within AO353_01895 at 400.845 kb on - strand, within AO353_01895 at 400.845 kb on - strand, within AO353_01895 at 400.892 kb on + strand, within AO353_01895 at 400.892 kb on + strand at 400.892 kb on + strand, within AO353_01895 at 400.893 kb on - strand, within AO353_01895 at 400.893 kb on - strand, within AO353_01895 at 400.953 kb on + strand, within AO353_01895 at 400.953 kb on + strand, within AO353_01895 at 400.953 kb on + strand, within AO353_01895 at 400.954 kb on - strand, within AO353_01895 at 400.954 kb on - strand, within AO353_01895 at 400.954 kb on - strand, within AO353_01895 at 400.954 kb on - strand, within AO353_01895 at 401.141 kb on + strand, within AO353_01895 at 401.141 kb on + strand, within AO353_01895 at 401.141 kb on + strand, within AO353_01895 at 401.141 kb on + strand, within AO353_01895 at 401.141 kb on + strand, within AO353_01895 at 401.142 kb on - strand, within AO353_01895 at 401.142 kb on - strand, within AO353_01895 at 401.142 kb on - strand, within AO353_01895 at 401.204 kb on + strand, within AO353_01895 at 401.207 kb on - strand, within AO353_01895 at 401.207 kb on - strand, within AO353_01895 at 401.228 kb on + strand at 401.228 kb on + strand, within AO353_01895 at 401.297 kb on + strand, within AO353_01895 at 401.298 kb on - strand, within AO353_01895 at 401.357 kb on + strand at 401.358 kb on - strand at 401.358 kb on - strand at 401.358 kb on - strand at 401.363 kb on + strand at 401.363 kb on + strand at 401.363 kb on + strand at 401.364 kb on - strand at 401.364 kb on - strand at 401.364 kb on - strand at 401.396 kb on + strand at 401.396 kb on + strand at 401.396 kb on + strand at 401.396 kb on + strand at 401.396 kb on + strand at 401.453 kb on + strand at 401.454 kb on - strand at 401.467 kb on + strand at 401.467 kb on + strand at 401.467 kb on + strand at 401.467 kb on + strand at 401.467 kb on + strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.468 kb on - strand at 401.507 kb on + strand at 401.507 kb on + strand at 401.508 kb on - strand at 401.566 kb on + strand at 401.567 kb on - strand at 401.567 kb on - strand at 401.603 kb on - strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.736 kb on + strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.737 kb on - strand, within AO353_01900 at 401.847 kb on + strand, within AO353_01900 at 401.847 kb on + strand, within AO353_01900 at 401.959 kb on + strand, within AO353_01900 at 401.960 kb on - strand, within AO353_01900 at 401.960 kb on - strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.000 kb on + strand, within AO353_01900 at 402.001 kb on - strand, within AO353_01900 at 402.001 kb on - strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.123 kb on + strand, within AO353_01900 at 402.124 kb on - strand, within AO353_01900 at 402.124 kb on - strand at 402.124 kb on - strand, within AO353_01900 at 402.124 kb on - strand, within AO353_01900 at 402.366 kb on - strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.451 kb on - strand at 402.451 kb on - strand at 402.502 kb on + strand at 402.503 kb on - strand at 402.545 kb on - strand at 402.568 kb on + strand at 402.568 kb on + strand at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.091 kb on + strand at 403.092 kb on - strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.153 kb on - strand at 403.262 kb on + strand at 403.262 kb on + strand at 403.337 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 400,570 + +0.2 400,571 - -0.4 400,612 + -2.4 400,613 - +0.2 400,629 + +1.3 400,630 - -0.1 400,799 + AO353_01895 0.24 +0.6 400,799 + AO353_01895 0.24 +0.1 400,799 + AO353_01895 0.24 +0.4 400,799 + AO353_01895 0.24 +1.6 400,799 + AO353_01895 0.24 -0.1 400,800 - AO353_01895 0.24 -1.1 400,800 - AO353_01895 0.24 +1.1 400,800 - AO353_01895 0.24 +1.7 400,800 - AO353_01895 0.24 -2.4 400,800 - AO353_01895 0.24 +1.0 400,800 - AO353_01895 0.24 +0.5 400,800 - AO353_01895 0.24 +0.6 400,832 + AO353_01895 0.28 +0.0 400,844 + AO353_01895 0.30 +0.5 400,844 + AO353_01895 0.30 +0.4 400,845 - AO353_01895 0.30 +0.1 400,845 - AO353_01895 0.30 +0.2 400,845 - AO353_01895 0.30 +0.3 400,845 - AO353_01895 0.30 +0.2 400,892 + AO353_01895 0.36 -0.2 400,892 + -0.7 400,892 + AO353_01895 0.36 -0.5 400,893 - AO353_01895 0.36 +1.2 400,893 - AO353_01895 0.36 +1.3 400,953 + AO353_01895 0.44 +0.2 400,953 + AO353_01895 0.44 -0.6 400,953 + AO353_01895 0.44 +0.0 400,954 - AO353_01895 0.44 -1.4 400,954 - AO353_01895 0.44 -0.2 400,954 - AO353_01895 0.44 +0.5 400,954 - AO353_01895 0.44 +1.3 401,141 + AO353_01895 0.67 +0.6 401,141 + AO353_01895 0.67 +0.7 401,141 + AO353_01895 0.67 -0.1 401,141 + AO353_01895 0.67 -1.6 401,141 + AO353_01895 0.67 +0.4 401,142 - AO353_01895 0.68 +0.3 401,142 - AO353_01895 0.68 -1.9 401,142 - AO353_01895 0.68 +1.7 401,204 + AO353_01895 0.75 +0.6 401,207 - AO353_01895 0.76 -1.3 401,207 - AO353_01895 0.76 +0.9 401,228 + +1.9 401,228 + AO353_01895 0.78 -0.3 401,297 + AO353_01895 0.87 +1.5 401,298 - AO353_01895 0.87 +0.2 401,357 + +0.8 401,358 - +0.6 401,358 - +0.8 401,358 - -1.4 401,363 + -0.8 401,363 + -0.2 401,363 + -0.3 401,364 - -0.3 401,364 - +0.2 401,364 - +0.7 401,396 + -0.4 401,396 + -2.3 401,396 + -1.6 401,396 + +1.3 401,396 + -0.1 401,453 + +0.4 401,454 - +1.6 401,467 + +1.7 401,467 + +1.6 401,467 + +0.9 401,467 + -0.7 401,467 + +0.9 401,468 - +1.5 401,468 - +0.5 401,468 - +0.4 401,468 - +0.5 401,468 - +1.7 401,468 - +0.7 401,468 - -0.0 401,507 + -1.1 401,507 + -1.4 401,508 - +0.0 401,566 + -0.5 401,567 - +0.5 401,567 - -0.7 401,603 - AO353_01900 0.11 +1.2 401,736 + AO353_01900 0.26 +2.2 401,736 + AO353_01900 0.26 +0.0 401,736 + AO353_01900 0.26 -0.1 401,736 + AO353_01900 0.26 +1.3 401,736 + AO353_01900 0.26 +1.4 401,736 + AO353_01900 0.26 -0.4 401,736 + AO353_01900 0.26 -2.1 401,736 + AO353_01900 0.26 +0.7 401,736 + AO353_01900 0.26 +2.0 401,737 - AO353_01900 0.26 -1.4 401,737 - AO353_01900 0.26 +0.3 401,737 - AO353_01900 0.26 +0.7 401,737 - AO353_01900 0.26 -0.4 401,737 - AO353_01900 0.26 -0.7 401,737 - AO353_01900 0.26 -0.3 401,737 - AO353_01900 0.26 -0.7 401,847 + AO353_01900 0.38 +0.9 401,847 + AO353_01900 0.38 +2.2 401,959 + AO353_01900 0.50 +1.1 401,960 - AO353_01900 0.50 +0.6 401,960 - AO353_01900 0.50 +1.5 402,000 + AO353_01900 0.55 +0.9 402,000 + AO353_01900 0.55 +1.6 402,000 + AO353_01900 0.55 +0.2 402,001 - AO353_01900 0.55 +1.2 402,001 - AO353_01900 0.55 +0.0 402,123 + AO353_01900 0.68 +0.5 402,123 + AO353_01900 0.68 -0.4 402,123 + AO353_01900 0.68 +0.5 402,123 + AO353_01900 0.68 +1.2 402,124 - AO353_01900 0.68 +0.7 402,124 - -0.1 402,124 - AO353_01900 0.68 -0.7 402,124 - AO353_01900 0.68 +1.0 402,366 - +0.5 402,430 + +1.9 402,430 + +0.9 402,430 + +0.7 402,430 + +1.5 402,430 + -1.1 402,431 - -0.1 402,431 - +1.3 402,431 - +1.1 402,431 - +0.9 402,431 - -0.2 402,431 - -0.4 402,431 - +1.9 402,432 + +0.3 402,432 + -0.1 402,432 + -1.2 402,433 - +1.8 402,433 - -0.1 402,433 - +0.9 402,433 - +2.9 402,433 - +0.6 402,434 + +1.2 402,434 + -0.7 402,434 + +0.5 402,434 + +0.6 402,434 + +0.8 402,434 + +0.1 402,434 + -1.1 402,434 + -0.3 402,434 + +0.1 402,434 + +0.4 402,434 + -0.7 402,434 + -0.4 402,434 + -0.3 402,434 + -0.1 402,434 + -0.9 402,434 + -1.9 402,435 - -0.4 402,435 - -2.1 402,435 - -0.5 402,435 - +0.2 402,435 - +0.3 402,435 - +0.5 402,435 - -0.9 402,435 - -1.1 402,435 - -0.1 402,435 - -0.3 402,435 - +1.2 402,435 - -1.7 402,435 - -1.5 402,435 - +1.5 402,435 - +1.6 402,435 - -0.1 402,435 - -0.7 402,435 - -0.7 402,435 - -0.3 402,451 - -0.7 402,451 - +1.4 402,502 + -0.0 402,503 - +0.9 402,545 - -0.1 402,568 + -0.8 402,568 + +0.6 402,677 + AO353_01905 0.22 -1.9 402,677 + AO353_01905 0.22 +1.9 402,677 + AO353_01905 0.22 -0.1 402,678 - AO353_01905 0.22 +1.2 402,678 - AO353_01905 0.22 +1.4 402,678 - AO353_01905 0.22 -0.7 402,678 - AO353_01905 0.22 +1.9 402,678 - AO353_01905 0.22 -0.2 402,680 + AO353_01905 0.22 +0.3 402,680 + AO353_01905 0.22 +2.1 402,680 + AO353_01905 0.22 -0.5 402,681 - AO353_01905 0.22 +0.9 402,681 - AO353_01905 0.22 -1.4 402,681 - AO353_01905 0.22 -1.1 402,683 + AO353_01905 0.23 -0.1 402,683 + AO353_01905 0.23 -2.3 402,683 + AO353_01905 0.23 +1.3 402,683 + AO353_01905 0.23 -0.1 402,683 + AO353_01905 0.23 -0.2 402,684 - AO353_01905 0.23 +0.9 402,684 - AO353_01905 0.23 +0.8 402,684 - AO353_01905 0.23 +0.1 402,684 - AO353_01905 0.23 -1.9 402,801 - AO353_01905 0.42 +0.9 402,801 - AO353_01905 0.42 -1.9 403,028 + AO353_01905 0.80 -1.0 403,028 + AO353_01905 0.80 -0.5 403,029 - AO353_01905 0.80 -0.1 403,029 - AO353_01905 0.80 -0.5 403,029 - AO353_01905 0.80 +0.3 403,091 + +1.5 403,092 - +1.3 403,152 + -1.4 403,152 + -0.7 403,152 + -0.3 403,152 + +0.1 403,153 - -0.4 403,262 + +0.2 403,262 + +0.3 403,337 - AO353_01910 0.11 -1.9 403,401 - AO353_01910 0.17 +0.2 403,401 - AO353_01910 0.17 +0.5 403,401 - AO353_01910 0.17 -0.9 403,404 + AO353_01910 0.17 +0.2 403,404 + AO353_01910 0.17 +1.2 403,405 - AO353_01910 0.17 -1.8 403,405 - AO353_01910 0.17 +0.3 403,405 - AO353_01910 0.17 +0.5 403,405 - AO353_01910 0.17 +1.7
Or see this region's nucleotide sequence