Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01800 and AO353_01805 overlap by 1 nucleotides AO353_01805 and AO353_01810 are separated by 254 nucleotides AO353_01810 and AO353_01815 are separated by 341 nucleotides
AO353_01800: AO353_01800 - hypothetical protein, at 377,218 to 377,619
_01800
AO353_01805: AO353_01805 - hypothetical protein, at 377,619 to 378,356
_01805
AO353_01810: AO353_01810 - branched-chain amino acid ABC transporter substrate-binding protein, at 378,611 to 379,924
_01810
AO353_01815: AO353_01815 - succinyl-CoA synthetase subunit alpha, at 380,266 to 381,147
_01815
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.613 kb on + strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.710 kb on - strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.794 kb on + strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.974 kb on + strand, within AO353_01805 at 377.975 kb on - strand, within AO353_01805 at 378.057 kb on + strand, within AO353_01805 at 378.099 kb on - strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.286 kb on + strand at 378.286 kb on + strand at 378.302 kb on + strand at 378.302 kb on + strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.326 kb on + strand at 378.326 kb on + strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.369 kb on + strand at 378.395 kb on - strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.487 kb on - strand at 378.557 kb on + strand at 378.557 kb on + strand at 378.558 kb on - strand at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810 at 379.386 kb on + strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.387 kb on - strand, within AO353_01810 at 379.542 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.552 kb on + strand, within AO353_01810 at 379.553 kb on - strand, within AO353_01810 at 379.553 kb on - strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.554 kb on + strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.555 kb on - strand, within AO353_01810 at 379.659 kb on + strand, within AO353_01810 at 379.659 kb on + strand, within AO353_01810 at 379.811 kb on - strand at 379.834 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.933 kb on + strand at 379.934 kb on - strand at 379.934 kb on - strand at 379.941 kb on + strand at 379.941 kb on + strand at 379.941 kb on + strand at 379.956 kb on + strand at 379.956 kb on + strand at 379.956 kb on + strand at 379.957 kb on - strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.003 kb on + strand at 380.004 kb on - strand at 380.066 kb on + strand at 380.066 kb on + strand at 380.067 kb on - strand at 380.070 kb on + strand at 380.070 kb on + strand at 380.070 kb on + strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.071 kb on - strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.091 kb on + strand at 380.092 kb on - strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.094 kb on + strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.095 kb on - strand at 380.106 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.122 kb on + strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.123 kb on - strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.145 kb on + strand at 380.146 kb on - strand at 380.146 kb on - strand at 380.146 kb on - strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.196 kb on + strand at 380.267 kb on + strand at 380.268 kb on - strand at 380.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 377,613 + +0.9 377,613 + +0.2 377,613 + +0.2 377,614 - -0.0 377,614 - -0.4 377,614 - -0.5 377,614 - -1.3 377,614 - +0.9 377,668 + +1.0 377,668 + -0.2 377,668 + -0.7 377,668 + -0.4 377,668 + +0.7 377,668 + +0.9 377,668 + +0.9 377,668 + -0.7 377,668 + +0.1 377,668 + +0.4 377,668 + +0.5 377,668 + -0.3 377,669 - -0.4 377,669 - +0.0 377,669 - -2.3 377,669 - +0.0 377,669 - +1.9 377,669 - +0.5 377,669 - -0.7 377,669 - +0.2 377,669 - -0.7 377,669 - -2.1 377,669 - -0.1 377,669 - -0.6 377,669 - -0.5 377,669 - +0.3 377,669 - -1.0 377,669 - +0.6 377,669 - +0.1 377,669 - +0.9 377,676 + -1.1 377,676 + -0.9 377,676 + -0.1 377,676 + -0.1 377,676 + +0.3 377,676 + +0.4 377,677 - -0.7 377,677 - -0.1 377,710 - AO353_01805 0.12 +2.5 377,791 + AO353_01805 0.23 +0.9 377,791 + AO353_01805 0.23 -1.3 377,791 + AO353_01805 0.23 +0.6 377,792 - AO353_01805 0.23 +0.9 377,792 - AO353_01805 0.23 +0.5 377,794 + AO353_01805 0.24 -0.2 377,795 - AO353_01805 0.24 -1.1 377,795 - AO353_01805 0.24 -0.5 377,938 + AO353_01805 0.43 +1.2 377,938 + AO353_01805 0.43 +0.1 377,938 + AO353_01805 0.43 +0.3 377,938 + AO353_01805 0.43 +1.3 377,938 + AO353_01805 0.43 +1.2 377,939 - AO353_01805 0.43 +0.5 377,939 - AO353_01805 0.43 -2.0 377,939 - AO353_01805 0.43 -0.6 377,974 + AO353_01805 0.48 +0.2 377,975 - AO353_01805 0.48 -0.3 378,057 + AO353_01805 0.59 +0.9 378,099 - AO353_01805 0.65 +1.9 378,272 + AO353_01805 0.88 -2.0 378,272 + AO353_01805 0.88 +0.1 378,286 + -0.3 378,286 + +1.6 378,302 + +0.9 378,302 + -2.0 378,303 - -0.7 378,303 - -0.1 378,303 - -0.1 378,303 - -0.1 378,326 + +0.9 378,326 + +1.5 378,327 - +1.0 378,327 - +1.9 378,327 - +1.3 378,369 + +0.4 378,395 - +1.9 378,450 + +0.9 378,450 + -1.6 378,450 + +3.5 378,450 + +0.9 378,450 + +0.9 378,450 + -1.3 378,450 + +0.1 378,450 + -1.4 378,450 + +1.4 378,450 + +0.1 378,450 + -1.4 378,450 + +2.3 378,451 - -0.1 378,451 - +0.6 378,451 - +0.9 378,451 - +0.0 378,451 - -1.1 378,451 - -0.7 378,451 - -0.7 378,451 - +0.2 378,451 - -0.1 378,451 - -0.4 378,451 - -0.9 378,451 - +0.7 378,451 - +0.9 378,451 - -1.9 378,451 - -0.4 378,451 - -1.4 378,480 + -0.7 378,480 + +0.7 378,480 + +0.2 378,480 + -0.1 378,480 + +0.9 378,480 + -0.2 378,480 + +0.8 378,480 + +0.6 378,481 - -1.4 378,481 - -0.8 378,481 - -1.9 378,481 - +0.9 378,486 + +0.0 378,486 + +1.0 378,486 + +0.3 378,487 - +1.9 378,557 + +0.7 378,557 + +0.9 378,558 - +0.9 378,987 + AO353_01810 0.29 +2.0 378,987 + AO353_01810 0.29 +0.4 378,987 + AO353_01810 0.29 -2.8 378,988 - AO353_01810 0.29 +0.3 378,988 - AO353_01810 0.29 +3.1 378,988 - AO353_01810 0.29 -0.4 379,014 + AO353_01810 0.31 -1.1 379,014 + AO353_01810 0.31 +0.1 379,015 - AO353_01810 0.31 +0.7 379,015 - AO353_01810 0.31 -0.3 379,119 + AO353_01810 0.39 +1.5 379,119 + AO353_01810 0.39 +0.3 379,119 + AO353_01810 0.39 -1.0 379,119 + AO353_01810 0.39 -3.0 379,119 + AO353_01810 0.39 +0.1 379,119 + AO353_01810 0.39 +1.9 379,120 - AO353_01810 0.39 +1.1 379,120 - AO353_01810 0.39 -0.4 379,120 - AO353_01810 0.39 +2.5 379,120 - AO353_01810 0.39 +1.2 379,120 - AO353_01810 0.39 +0.1 379,120 - AO353_01810 0.39 -1.4 379,120 - AO353_01810 0.39 +0.4 379,120 - AO353_01810 0.39 -0.1 379,120 - AO353_01810 0.39 +0.5 379,120 - AO353_01810 0.39 +2.7 379,148 - AO353_01810 0.41 +1.2 379,148 - AO353_01810 0.41 -0.5 379,200 + AO353_01810 0.45 +1.5 379,200 + AO353_01810 0.45 +1.0 379,200 + AO353_01810 0.45 -1.8 379,200 + AO353_01810 0.45 +0.6 379,200 + AO353_01810 0.45 +0.5 379,201 - AO353_01810 0.45 +1.0 379,201 - AO353_01810 0.45 +2.4 379,201 - AO353_01810 0.45 +0.5 379,347 + AO353_01810 0.56 +3.0 379,347 + AO353_01810 0.56 +0.5 379,386 + AO353_01810 0.59 -1.4 379,387 - AO353_01810 0.59 +1.1 379,387 - AO353_01810 0.59 -0.5 379,387 - AO353_01810 0.59 +1.8 379,542 + AO353_01810 0.71 +1.8 379,552 + AO353_01810 0.72 +2.6 379,552 + AO353_01810 0.72 +1.5 379,552 + AO353_01810 0.72 +0.2 379,552 + AO353_01810 0.72 -0.4 379,552 + AO353_01810 0.72 -0.8 379,552 + AO353_01810 0.72 +1.2 379,553 - AO353_01810 0.72 -0.2 379,553 - AO353_01810 0.72 -1.1 379,554 + AO353_01810 0.72 -0.4 379,554 + AO353_01810 0.72 +0.9 379,554 + AO353_01810 0.72 -0.1 379,555 - AO353_01810 0.72 +1.5 379,555 - AO353_01810 0.72 -0.5 379,555 - AO353_01810 0.72 +3.2 379,555 - AO353_01810 0.72 +2.5 379,659 + AO353_01810 0.80 +1.9 379,659 + AO353_01810 0.80 +2.2 379,811 - +0.2 379,834 + -0.1 379,933 + -0.9 379,933 + +1.9 379,933 + +0.6 379,933 + -0.3 379,933 + -0.5 379,933 + -0.1 379,934 - +1.7 379,934 - +0.6 379,941 + -1.1 379,941 + +0.9 379,941 + +0.7 379,956 + -1.4 379,956 + +1.8 379,956 + +2.5 379,957 - +0.6 380,003 + +1.7 380,003 + +1.2 380,003 + -0.7 380,003 + +1.9 380,003 + +2.7 380,003 + +1.6 380,003 + +1.1 380,004 - -0.5 380,066 + +0.9 380,066 + +0.9 380,067 - +2.1 380,070 + +1.2 380,070 + +1.8 380,070 + -0.7 380,071 - +1.1 380,071 - -0.2 380,071 - -2.6 380,071 - -1.4 380,071 - -1.4 380,091 + +0.5 380,091 + +1.2 380,091 + +0.0 380,091 + +0.5 380,092 - +0.2 380,094 + -1.9 380,094 + -0.2 380,094 + +0.2 380,094 + +0.9 380,094 + -0.1 380,095 - -0.1 380,095 - -0.8 380,095 - -1.1 380,095 - -1.1 380,095 - +0.7 380,095 - -1.7 380,106 + -0.7 380,122 + +0.9 380,122 + -1.6 380,122 + -0.2 380,122 + -0.3 380,122 + +1.8 380,123 - +0.3 380,123 - +0.9 380,123 - +0.1 380,123 - +0.9 380,145 + +1.6 380,145 + +0.6 380,145 + +1.3 380,145 + -0.3 380,145 + +0.6 380,145 + -1.1 380,146 - -1.9 380,146 - -1.1 380,146 - -0.9 380,196 + +0.3 380,196 + +0.2 380,196 + +1.5 380,196 + +1.1 380,267 + -0.9 380,268 - -0.1 380,268 - +0.6
Or see this region's nucleotide sequence