Experiment: Cholin acetate 38 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01235 and AO353_01240 are separated by 546 nucleotides AO353_01240 and AO353_01245 are separated by 90 nucleotides
AO353_01235: AO353_01235 - electron transporter RnfB, at 270,082 to 270,831
_01235
AO353_01240: AO353_01240 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 271,378 to 273,042
_01240
AO353_01245: AO353_01245 - AraC family transcriptional regulator, at 273,133 to 274,023
_01245
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.915 kb on - strand at 270.915 kb on - strand at 270.915 kb on - strand at 270.933 kb on - strand at 270.959 kb on - strand at 270.959 kb on - strand at 271.010 kb on - strand at 271.010 kb on - strand at 271.010 kb on - strand at 271.010 kb on - strand at 271.010 kb on - strand at 271.047 kb on - strand at 271.047 kb on - strand at 271.067 kb on - strand at 271.067 kb on - strand at 271.138 kb on - strand at 271.138 kb on - strand at 271.169 kb on + strand at 271.169 kb on + strand at 271.170 kb on - strand at 271.170 kb on - strand at 271.223 kb on + strand at 271.233 kb on + strand at 271.233 kb on + strand at 271.234 kb on - strand at 271.244 kb on + strand at 271.244 kb on + strand at 271.244 kb on + strand at 271.244 kb on + strand at 271.244 kb on + strand at 271.244 kb on + strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.245 kb on - strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.248 kb on + strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.249 kb on - strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.250 kb on + strand at 271.262 kb on + strand at 271.365 kb on + strand at 271.365 kb on + strand at 271.365 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.040 kb on + strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.041 kb on - strand at 273.117 kb on + strand at 273.117 kb on + strand at 273.117 kb on + strand at 273.135 kb on - strand at 273.135 kb on - strand at 273.135 kb on - strand at 273.160 kb on - strand at 273.160 kb on - strand at 273.170 kb on + strand at 273.170 kb on + strand at 273.177 kb on + strand at 273.177 kb on + strand at 273.177 kb on + strand at 273.177 kb on + strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.178 kb on - strand at 273.179 kb on + strand at 273.179 kb on + strand at 273.180 kb on - strand at 273.296 kb on + strand, within AO353_01245 at 273.296 kb on + strand, within AO353_01245 at 273.296 kb on + strand, within AO353_01245 at 273.296 kb on + strand, within AO353_01245 at 273.296 kb on + strand, within AO353_01245 at 273.297 kb on - strand, within AO353_01245 at 273.297 kb on - strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.351 kb on + strand, within AO353_01245 at 273.352 kb on - strand, within AO353_01245 at 273.352 kb on - strand, within AO353_01245 at 273.352 kb on - strand, within AO353_01245 at 273.352 kb on - strand, within AO353_01245 at 273.648 kb on + strand, within AO353_01245 at 273.648 kb on + strand, within AO353_01245 at 273.648 kb on + strand at 273.648 kb on + strand, within AO353_01245 at 273.648 kb on + strand, within AO353_01245 at 273.649 kb on - strand, within AO353_01245 at 273.791 kb on + strand, within AO353_01245 at 273.791 kb on + strand, within AO353_01245 at 273.792 kb on - strand, within AO353_01245 at 273.806 kb on + strand, within AO353_01245 at 273.806 kb on + strand, within AO353_01245 at 273.806 kb on + strand, within AO353_01245 at 273.817 kb on - strand, within AO353_01245 at 273.830 kb on + strand, within AO353_01245 at 273.830 kb on - strand, within AO353_01245 at 273.875 kb on + strand, within AO353_01245 at 273.875 kb on + strand, within AO353_01245 at 273.875 kb on + strand, within AO353_01245 at 273.875 kb on + strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.876 kb on - strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.916 kb on + strand, within AO353_01245 at 273.917 kb on - strand, within AO353_01245 at 273.917 kb on - strand, within AO353_01245 at 274.015 kb on + strand at 274.015 kb on + strand at 274.016 kb on - strand at 274.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 38 mM remove 270,915 - +0.9 270,915 - -1.9 270,915 - +0.6 270,933 - -0.9 270,959 - -0.9 270,959 - -0.3 271,010 - -0.7 271,010 - -1.1 271,010 - -0.4 271,010 - +1.1 271,010 - -1.9 271,047 - -0.7 271,047 - +0.7 271,067 - -0.9 271,067 - +0.9 271,138 - +0.6 271,138 - +0.6 271,169 + +1.6 271,169 + -1.9 271,170 - -1.2 271,170 - -0.1 271,223 + +1.0 271,233 + +0.6 271,233 + -0.7 271,234 - +0.4 271,244 + +0.7 271,244 + +0.9 271,244 + +0.5 271,244 + -1.4 271,244 + +0.6 271,244 + -2.1 271,245 - -1.4 271,245 - -0.7 271,245 - +0.3 271,245 - -1.7 271,245 - +1.0 271,245 - -1.9 271,248 + +2.3 271,248 + -0.1 271,248 + +1.0 271,248 + +0.1 271,248 + -0.1 271,248 + +0.3 271,248 + -0.7 271,248 + +0.9 271,248 + -0.1 271,248 + +1.9 271,248 + -0.3 271,248 + -0.7 271,249 - -0.3 271,249 - +1.8 271,249 - -1.1 271,249 - +1.6 271,249 - -3.2 271,249 - -1.3 271,249 - +0.3 271,249 - +1.6 271,249 - -1.2 271,249 - -1.4 271,249 - -0.7 271,249 - -0.7 271,249 - +0.9 271,250 + +1.5 271,250 + +0.2 271,250 + +2.5 271,250 + -1.9 271,250 + -1.7 271,250 + -0.1 271,250 + -0.1 271,250 + -1.4 271,250 + -0.3 271,250 + -1.1 271,250 + -0.3 271,250 + -0.8 271,262 + -0.7 271,365 + +0.7 271,365 + -1.7 271,365 + -0.3 273,040 + +1.6 273,040 + +0.9 273,040 + +2.0 273,040 + +0.4 273,040 + +0.1 273,040 + -1.4 273,040 + -0.7 273,040 + -1.1 273,040 + -1.0 273,040 + +0.9 273,040 + +0.9 273,040 + +0.9 273,040 + -0.7 273,041 - +0.9 273,041 - +0.9 273,041 - +0.1 273,041 - -1.0 273,041 - +0.2 273,041 - -1.1 273,041 - +0.1 273,041 - +2.0 273,117 + +0.1 273,117 + +0.6 273,117 + -0.0 273,135 - +0.3 273,135 - -0.1 273,135 - +0.2 273,160 - +1.4 273,160 - -1.7 273,170 + +1.7 273,170 + +0.4 273,177 + -0.1 273,177 + -2.4 273,177 + -0.6 273,177 + +0.9 273,178 - -1.4 273,178 - +0.3 273,178 - -1.7 273,178 - -1.4 273,178 - +1.3 273,178 - -0.1 273,178 - +1.1 273,179 + +0.4 273,179 + -0.7 273,180 - +0.3 273,296 + AO353_01245 0.18 -1.7 273,296 + AO353_01245 0.18 +0.3 273,296 + AO353_01245 0.18 -0.2 273,296 + AO353_01245 0.18 +0.6 273,296 + AO353_01245 0.18 +1.7 273,297 - AO353_01245 0.18 -0.9 273,297 - AO353_01245 0.18 +0.9 273,351 + AO353_01245 0.24 +0.3 273,351 + AO353_01245 0.24 -0.4 273,351 + AO353_01245 0.24 -0.9 273,351 + AO353_01245 0.24 +0.5 273,351 + AO353_01245 0.24 -0.1 273,351 + AO353_01245 0.24 -1.1 273,352 - AO353_01245 0.25 +0.3 273,352 - AO353_01245 0.25 -0.3 273,352 - AO353_01245 0.25 +1.5 273,352 - AO353_01245 0.25 -0.3 273,648 + AO353_01245 0.58 +1.3 273,648 + AO353_01245 0.58 -0.1 273,648 + +0.3 273,648 + AO353_01245 0.58 +0.3 273,648 + AO353_01245 0.58 -0.6 273,649 - AO353_01245 0.58 +0.6 273,791 + AO353_01245 0.74 +0.4 273,791 + AO353_01245 0.74 +1.4 273,792 - AO353_01245 0.74 +0.6 273,806 + AO353_01245 0.76 +1.9 273,806 + AO353_01245 0.76 -0.9 273,806 + AO353_01245 0.76 +1.9 273,817 - AO353_01245 0.77 +0.6 273,830 + AO353_01245 0.78 -0.4 273,830 - AO353_01245 0.78 +0.2 273,875 + AO353_01245 0.83 -2.4 273,875 + AO353_01245 0.83 +1.9 273,875 + AO353_01245 0.83 +0.9 273,875 + AO353_01245 0.83 +0.4 273,876 - AO353_01245 0.83 +0.0 273,876 - AO353_01245 0.83 +0.6 273,876 - AO353_01245 0.83 -0.5 273,876 - AO353_01245 0.83 +0.1 273,876 - AO353_01245 0.83 +0.6 273,876 - AO353_01245 0.83 +0.4 273,876 - AO353_01245 0.83 -0.3 273,876 - AO353_01245 0.83 +0.3 273,876 - AO353_01245 0.83 -0.1 273,916 + AO353_01245 0.88 +1.5 273,916 + AO353_01245 0.88 +0.5 273,916 + AO353_01245 0.88 +1.7 273,916 + AO353_01245 0.88 +0.5 273,916 + AO353_01245 0.88 -0.5 273,916 + AO353_01245 0.88 +0.1 273,917 - AO353_01245 0.88 -1.1 273,917 - AO353_01245 0.88 +0.9 274,015 + +0.9 274,015 + +0.9 274,016 - +0.4 274,016 - +0.3
Or see this region's nucleotide sequence