Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00130

Experiment: Cholin acetate 38 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00120 and AO353_00125 overlap by 4 nucleotidesAO353_00125 and AO353_00130 overlap by 4 nucleotidesAO353_00130 and AO353_00135 are separated by 8 nucleotides AO353_00120: AO353_00120 - DNA-binding protein, at 25,693 to 26,238 _00120 AO353_00125: AO353_00125 - hypothetical protein, at 26,235 to 27,158 _00125 AO353_00130: AO353_00130 - hypothetical protein, at 27,155 to 27,862 _00130 AO353_00135: AO353_00135 - phage tail protein, at 27,871 to 29,544 _00135 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.227 kb on + strandat 26.228 kb on - strandat 26.228 kb on - strandat 26.239 kb on - strandat 26.524 kb on + strand, within AO353_00125at 26.759 kb on + strand, within AO353_00125at 26.759 kb on + strand, within AO353_00125at 26.785 kb on + strand, within AO353_00125at 26.785 kb on + strand, within AO353_00125at 26.785 kb on + strand, within AO353_00125at 27.287 kb on + strand, within AO353_00130at 27.288 kb on - strand, within AO353_00130at 27.288 kb on - strand, within AO353_00130at 27.345 kb on + strand, within AO353_00130at 27.345 kb on + strand, within AO353_00130at 27.345 kb on + strand, within AO353_00130at 27.345 kb on + strand, within AO353_00130at 27.346 kb on - strand, within AO353_00130at 27.346 kb on - strand, within AO353_00130at 27.346 kb on - strand, within AO353_00130at 27.346 kb on - strand, within AO353_00130at 27.355 kb on - strand, within AO353_00130at 27.395 kb on + strand, within AO353_00130at 27.395 kb on + strand, within AO353_00130at 27.395 kb on + strand, within AO353_00130at 27.395 kb on + strand, within AO353_00130at 27.395 kb on + strand, within AO353_00130at 27.396 kb on - strand, within AO353_00130at 27.396 kb on - strand, within AO353_00130at 27.396 kb on - strand, within AO353_00130at 27.467 kb on - strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.468 kb on + strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.469 kb on - strand, within AO353_00130at 27.475 kb on + strand, within AO353_00130at 27.476 kb on - strand, within AO353_00130at 27.476 kb on - strandat 27.510 kb on + strand, within AO353_00130at 27.510 kb on + strand, within AO353_00130at 27.510 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.533 kb on + strand, within AO353_00130at 27.534 kb on - strand, within AO353_00130at 27.534 kb on - strand, within AO353_00130at 27.654 kb on + strand, within AO353_00130at 27.655 kb on - strand, within AO353_00130at 27.675 kb on + strand, within AO353_00130at 27.675 kb on + strand, within AO353_00130at 27.749 kb on + strand, within AO353_00130at 27.773 kb on + strand, within AO353_00130at 27.819 kb on + strandat 27.819 kb on + strandat 27.819 kb on + strandat 27.819 kb on + strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.820 kb on - strandat 27.887 kb on + strandat 27.888 kb on - strandat 28.009 kb on + strandat 28.009 kb on + strandat 28.009 kb on + strandat 28.010 kb on - strandat 28.010 kb on - strandat 28.018 kb on - strandat 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.076 kb on + strand, within AO353_00135at 28.077 kb on - strand, within AO353_00135at 28.077 kb on - strand, within AO353_00135at 28.077 kb on - strand, within AO353_00135at 28.134 kb on + strand, within AO353_00135at 28.135 kb on - strand, within AO353_00135at 28.135 kb on - strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.159 kb on + strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.160 kb on - strand, within AO353_00135at 28.176 kb on + strand, within AO353_00135at 28.176 kb on + strand, within AO353_00135at 28.176 kb on + strand, within AO353_00135at 28.176 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.218 kb on + strand, within AO353_00135at 28.219 kb on - strand, within AO353_00135at 28.219 kb on - strand, within AO353_00135at 28.219 kb on - strand, within AO353_00135at 28.219 kb on - strand, within AO353_00135at 28.219 kb on - strand, within AO353_00135at 28.306 kb on + strand, within AO353_00135at 28.306 kb on + strand, within AO353_00135at 28.307 kb on - strand, within AO353_00135at 28.307 kb on - strand, within AO353_00135at 28.307 kb on - strand, within AO353_00135at 28.340 kb on - strand, within AO353_00135at 28.398 kb on + strand, within AO353_00135at 28.398 kb on + strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.399 kb on - strand, within AO353_00135at 28.402 kb on + strand, within AO353_00135at 28.402 kb on + strand, within AO353_00135at 28.402 kb on + strand, within AO353_00135at 28.403 kb on - strand, within AO353_00135at 28.403 kb on - strand, within AO353_00135at 28.403 kb on - strand, within AO353_00135at 28.403 kb on - strand, within AO353_00135at 28.522 kb on + strand, within AO353_00135at 28.523 kb on - strand, within AO353_00135at 28.664 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.775 kb on + strand, within AO353_00135at 28.776 kb on - strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.802 kb on + strand, within AO353_00135at 28.803 kb on - strand, within AO353_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 38 mM
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26,227 + +0.4
26,228 - +0.1
26,228 - -0.1
26,239 - +0.5
26,524 + AO353_00125 0.31 +0.6
26,759 + AO353_00125 0.57 -0.4
26,759 + AO353_00125 0.57 -0.1
26,785 + AO353_00125 0.60 -1.3
26,785 + AO353_00125 0.60 -1.7
26,785 + AO353_00125 0.60 -0.4
27,287 + AO353_00130 0.19 -0.8
27,288 - AO353_00130 0.19 +0.3
27,288 - AO353_00130 0.19 +0.9
27,345 + AO353_00130 0.27 +0.5
27,345 + AO353_00130 0.27 +0.9
27,345 + AO353_00130 0.27 -0.1
27,345 + AO353_00130 0.27 +0.2
27,346 - AO353_00130 0.27 -0.8
27,346 - AO353_00130 0.27 +0.9
27,346 - AO353_00130 0.27 +0.5
27,346 - AO353_00130 0.27 -1.3
27,355 - AO353_00130 0.28 -1.6
27,395 + AO353_00130 0.34 +0.5
27,395 + AO353_00130 0.34 -0.9
27,395 + AO353_00130 0.34 +0.4
27,395 + AO353_00130 0.34 +0.5
27,395 + AO353_00130 0.34 -1.1
27,396 - AO353_00130 0.34 -0.9
27,396 - AO353_00130 0.34 -1.1
27,396 - AO353_00130 0.34 +0.9
27,467 - AO353_00130 0.44 -1.9
27,468 + AO353_00130 0.44 -0.9
27,468 + AO353_00130 0.44 -0.1
27,468 + AO353_00130 0.44 +1.1
27,468 + AO353_00130 0.44 -0.5
27,468 + AO353_00130 0.44 -0.1
27,468 + AO353_00130 0.44 -1.6
27,468 + AO353_00130 0.44 +0.5
27,468 + AO353_00130 0.44 +0.3
27,469 - AO353_00130 0.44 -0.5
27,469 - AO353_00130 0.44 +0.3
27,469 - AO353_00130 0.44 -0.7
27,469 - AO353_00130 0.44 +1.6
27,469 - AO353_00130 0.44 +1.5
27,469 - AO353_00130 0.44 -1.9
27,469 - AO353_00130 0.44 -1.7
27,469 - AO353_00130 0.44 +0.9
27,469 - AO353_00130 0.44 -2.5
27,469 - AO353_00130 0.44 +0.3
27,469 - AO353_00130 0.44 -0.7
27,475 + AO353_00130 0.45 +1.6
27,476 - AO353_00130 0.45 -0.1
27,476 - -0.1
27,510 + AO353_00130 0.50 -1.5
27,510 + AO353_00130 0.50 +0.9
27,510 + AO353_00130 0.50 -1.9
27,533 + AO353_00130 0.53 -1.1
27,533 + AO353_00130 0.53 -0.9
27,533 + AO353_00130 0.53 +2.5
27,533 + AO353_00130 0.53 -1.5
27,533 + AO353_00130 0.53 +1.5
27,533 + AO353_00130 0.53 -1.5
27,534 - AO353_00130 0.54 -0.0
27,534 - AO353_00130 0.54 +2.1
27,654 + AO353_00130 0.70 +0.4
27,655 - AO353_00130 0.71 -2.1
27,675 + AO353_00130 0.73 +1.9
27,675 + AO353_00130 0.73 -0.7
27,749 + AO353_00130 0.84 +1.3
27,773 + AO353_00130 0.87 -1.5
27,819 + +1.2
27,819 + +1.1
27,819 + +0.9
27,819 + -0.5
27,820 - +0.6
27,820 - -0.9
27,820 - +0.5
27,820 - -0.1
27,820 - -0.4
27,820 - +1.5
27,820 - +0.2
27,887 + -0.3
27,888 - -1.8
28,009 + +0.5
28,009 + +1.1
28,009 + +0.9
28,010 - -0.7
28,010 - -0.7
28,018 - +0.9
28,076 + AO353_00135 0.12 -1.1
28,076 + AO353_00135 0.12 -1.7
28,076 + AO353_00135 0.12 +0.7
28,076 + AO353_00135 0.12 +0.1
28,076 + AO353_00135 0.12 +1.1
28,076 + AO353_00135 0.12 +2.5
28,076 + AO353_00135 0.12 -1.5
28,076 + AO353_00135 0.12 +0.9
28,076 + AO353_00135 0.12 +0.7
28,076 + AO353_00135 0.12 -0.1
28,077 - AO353_00135 0.12 +1.5
28,077 - AO353_00135 0.12 +1.3
28,077 - AO353_00135 0.12 +1.5
28,134 + AO353_00135 0.16 -1.1
28,135 - AO353_00135 0.16 +0.5
28,135 - AO353_00135 0.16 +0.7
28,159 + AO353_00135 0.17 +0.0
28,159 + AO353_00135 0.17 +0.9
28,159 + AO353_00135 0.17 +1.2
28,159 + AO353_00135 0.17 -0.0
28,159 + AO353_00135 0.17 -0.4
28,159 + AO353_00135 0.17 +0.9
28,160 - AO353_00135 0.17 -0.4
28,160 - AO353_00135 0.17 -0.6
28,160 - AO353_00135 0.17 +0.1
28,160 - AO353_00135 0.17 -0.5
28,160 - AO353_00135 0.17 +1.5
28,160 - AO353_00135 0.17 -1.7
28,160 - AO353_00135 0.17 -0.7
28,160 - AO353_00135 0.17 +0.9
28,176 + AO353_00135 0.18 -1.5
28,176 + AO353_00135 0.18 +0.9
28,176 + AO353_00135 0.18 +1.0
28,176 + AO353_00135 0.18 +0.9
28,218 + AO353_00135 0.21 +0.2
28,218 + AO353_00135 0.21 +1.4
28,218 + AO353_00135 0.21 +1.9
28,218 + AO353_00135 0.21 +2.9
28,218 + AO353_00135 0.21 +0.2
28,218 + AO353_00135 0.21 +1.0
28,219 - AO353_00135 0.21 +0.2
28,219 - AO353_00135 0.21 +1.7
28,219 - AO353_00135 0.21 -0.4
28,219 - AO353_00135 0.21 +1.1
28,219 - AO353_00135 0.21 -0.9
28,306 + AO353_00135 0.26 +0.7
28,306 + AO353_00135 0.26 -0.3
28,307 - AO353_00135 0.26 -0.1
28,307 - AO353_00135 0.26 +2.5
28,307 - AO353_00135 0.26 +1.5
28,340 - AO353_00135 0.28 +1.6
28,398 + AO353_00135 0.31 +0.9
28,398 + AO353_00135 0.31 +0.2
28,399 - AO353_00135 0.32 +0.4
28,399 - AO353_00135 0.32 -0.3
28,399 - AO353_00135 0.32 -1.5
28,399 - AO353_00135 0.32 -0.1
28,399 - AO353_00135 0.32 -0.1
28,399 - AO353_00135 0.32 +1.5
28,399 - AO353_00135 0.32 -0.7
28,402 + AO353_00135 0.32 +1.9
28,402 + AO353_00135 0.32 +0.3
28,402 + AO353_00135 0.32 +0.3
28,403 - AO353_00135 0.32 -0.7
28,403 - AO353_00135 0.32 +1.2
28,403 - AO353_00135 0.32 +0.5
28,403 - AO353_00135 0.32 +0.3
28,522 + AO353_00135 0.39 +0.1
28,523 - AO353_00135 0.39 +0.5
28,664 + AO353_00135 0.47 +0.9
28,775 + AO353_00135 0.54 +1.9
28,775 + AO353_00135 0.54 -1.7
28,775 + AO353_00135 0.54 +2.5
28,775 + AO353_00135 0.54 -0.9
28,776 - AO353_00135 0.54 +0.2
28,802 + AO353_00135 0.56 -0.1
28,802 + AO353_00135 0.56 +0.3
28,802 + AO353_00135 0.56 +0.5
28,802 + AO353_00135 0.56 +0.1
28,802 + AO353_00135 0.56 +0.3
28,803 - AO353_00135 0.56 -0.0

Or see this region's nucleotide sequence