Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00005

Experiment: Cholin acetate 38 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00005 and AO353_00010 are separated by 37 nucleotides AO353_00005: AO353_00005 - isoprenylcysteine carboxyl methyltransferase, at 379 to 1,038 _00005 AO353_00010: AO353_00010 - hypothetical protein, at 1,076 to 2,173 _00010 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.324 kb on - strandat 0.324 kb on - strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.347 kb on + strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.348 kb on - strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.349 kb on + strandat 0.350 kb on - strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.351 kb on + strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.352 kb on - strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.430 kb on + strandat 0.431 kb on - strandat 0.431 kb on - strandat 0.566 kb on + strand, within AO353_00005at 0.602 kb on + strand, within AO353_00005at 0.603 kb on - strand, within AO353_00005at 0.603 kb on - strand, within AO353_00005at 0.643 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.686 kb on + strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.687 kb on - strand, within AO353_00005at 0.707 kb on + strand, within AO353_00005at 0.707 kb on + strand, within AO353_00005at 0.708 kb on - strand, within AO353_00005at 0.708 kb on - strand, within AO353_00005at 0.750 kb on - strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.795 kb on + strand, within AO353_00005at 0.796 kb on - strand, within AO353_00005at 0.796 kb on - strand, within AO353_00005at 0.813 kb on + strand, within AO353_00005at 0.817 kb on + strand, within AO353_00005at 0.818 kb on - strand, within AO353_00005at 0.842 kb on - strand, within AO353_00005at 0.851 kb on + strand, within AO353_00005at 0.851 kb on + strand, within AO353_00005at 0.852 kb on - strand, within AO353_00005at 0.945 kb on - strand, within AO353_00005at 0.989 kb on - strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.997 kb on + strandat 0.998 kb on - strandat 0.998 kb on - strandat 0.998 kb on - strandat 0.998 kb on - strandat 1.033 kb on + strandat 1.033 kb on + strandat 1.071 kb on + strandat 1.071 kb on + strandat 1.071 kb on + strandat 1.072 kb on - strandat 1.072 kb on - strandat 1.072 kb on - strandat 1.078 kb on - strandat 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.249 kb on + strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.250 kb on - strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.251 kb on + strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.252 kb on - strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.253 kb on + strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.254 kb on - strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.312 kb on + strand, within AO353_00010at 1.313 kb on - strand, within AO353_00010at 1.497 kb on + strand, within AO353_00010at 1.498 kb on - strand, within AO353_00010at 1.512 kb on + strand, within AO353_00010at 1.512 kb on + strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.513 kb on - strand, within AO353_00010at 1.540 kb on + strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.541 kb on - strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.551 kb on + strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.552 kb on - strand, within AO353_00010at 1.612 kb on - strand, within AO353_00010at 1.666 kb on + strand, within AO353_00010at 1.666 kb on + strand, within AO353_00010at 1.688 kb on - strand, within AO353_00010at 1.688 kb on - strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.001 kb on + strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010at 2.002 kb on - strand, within AO353_00010

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 38 mM
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324 - +0.6
324 - -1.1
347 + -1.7
347 + -1.5
347 + -0.5
347 + -1.5
347 + -0.2
347 + +2.5
347 + +0.7
347 + -0.4
347 + -0.5
347 + +1.2
347 + -1.0
347 + +0.9
347 + -0.5
347 + +0.1
347 + +2.7
347 + +0.4
347 + +1.1
347 + -0.7
347 + -0.1
347 + +0.4
347 + +0.3
348 - +0.7
348 - +0.9
348 - -1.1
348 - -0.7
348 - -0.9
348 - -2.1
348 - +0.3
348 - -0.1
348 - +0.4
348 - +0.2
348 - -0.9
348 - +0.5
348 - +1.6
348 - +0.4
349 + -0.5
349 + -0.9
349 + -0.2
349 + -0.3
349 + +1.6
349 + +1.5
349 + +0.4
349 + +0.6
349 + +0.0
349 + -0.1
349 + +0.9
349 + -0.1
349 + +0.1
349 + +2.7
350 - +0.3
351 + +0.1
351 + -0.1
351 + -0.3
351 + +0.6
351 + -0.2
352 - +0.9
352 - +0.0
352 - +0.1
352 - +0.9
352 - +0.6
430 + +0.1
430 + +0.1
430 + -2.3
430 + +0.9
431 - -0.3
431 - -0.4
566 + AO353_00005 0.28 +1.0
602 + AO353_00005 0.34 +0.5
603 - AO353_00005 0.34 +0.9
603 - AO353_00005 0.34 -2.3
643 + AO353_00005 0.40 +0.3
686 + AO353_00005 0.47 -1.0
686 + AO353_00005 0.47 -0.7
686 + AO353_00005 0.47 -0.9
686 + AO353_00005 0.47 -0.7
686 + AO353_00005 0.47 -0.8
687 - AO353_00005 0.47 -0.1
687 - AO353_00005 0.47 -0.7
687 - AO353_00005 0.47 +0.9
687 - AO353_00005 0.47 -0.8
707 + AO353_00005 0.50 +1.0
707 + AO353_00005 0.50 -0.4
708 - AO353_00005 0.50 -0.7
708 - AO353_00005 0.50 +0.5
750 - AO353_00005 0.56 -0.1
795 + AO353_00005 0.63 +0.9
795 + AO353_00005 0.63 -1.7
795 + AO353_00005 0.63 +2.5
796 - AO353_00005 0.63 -0.1
796 - AO353_00005 0.63 +1.1
813 + AO353_00005 0.66 -0.9
817 + AO353_00005 0.66 +0.3
818 - AO353_00005 0.67 -0.5
842 - AO353_00005 0.70 -0.3
851 + AO353_00005 0.72 -0.7
851 + AO353_00005 0.72 +0.3
852 - AO353_00005 0.72 -0.6
945 - AO353_00005 0.86 -1.5
989 - -1.7
997 + +0.9
997 + +0.9
997 + +0.5
997 + -1.3
997 + +0.9
998 - +0.3
998 - +0.7
998 - +0.3
998 - +1.1
1,033 + +0.2
1,033 + -0.7
1,071 + -0.7
1,071 + +1.3
1,071 + +1.7
1,072 - -0.1
1,072 - +1.6
1,072 - -0.4
1,078 - -0.5
1,249 + AO353_00010 0.16 -2.7
1,249 + AO353_00010 0.16 +0.5
1,249 + AO353_00010 0.16 -1.6
1,249 + AO353_00010 0.16 -0.1
1,249 + AO353_00010 0.16 -0.1
1,249 + AO353_00010 0.16 +1.9
1,249 + AO353_00010 0.16 +0.5
1,249 + AO353_00010 0.16 -1.7
1,249 + AO353_00010 0.16 +1.5
1,249 + AO353_00010 0.16 -0.4
1,249 + AO353_00010 0.16 +1.0
1,249 + AO353_00010 0.16 +1.5
1,249 + AO353_00010 0.16 -0.1
1,249 + AO353_00010 0.16 -0.4
1,249 + AO353_00010 0.16 +0.6
1,249 + AO353_00010 0.16 +1.1
1,249 + AO353_00010 0.16 +0.4
1,249 + AO353_00010 0.16 -1.3
1,249 + AO353_00010 0.16 -0.5
1,249 + AO353_00010 0.16 +0.9
1,249 + AO353_00010 0.16 -1.5
1,249 + AO353_00010 0.16 -0.9
1,249 + AO353_00010 0.16 +1.5
1,250 - AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 -0.1
1,250 - AO353_00010 0.16 +0.5
1,250 - AO353_00010 0.16 -1.7
1,250 - AO353_00010 0.16 -1.1
1,250 - AO353_00010 0.16 -2.1
1,250 - AO353_00010 0.16 +0.4
1,250 - AO353_00010 0.16 +2.7
1,250 - AO353_00010 0.16 +1.9
1,250 - AO353_00010 0.16 +0.3
1,250 - AO353_00010 0.16 +0.9
1,250 - AO353_00010 0.16 +0.9
1,250 - AO353_00010 0.16 +0.9
1,250 - AO353_00010 0.16 -0.7
1,250 - AO353_00010 0.16 +0.9
1,250 - AO353_00010 0.16 -1.1
1,250 - AO353_00010 0.16 +0.9
1,250 - AO353_00010 0.16 -0.5
1,250 - AO353_00010 0.16 +0.1
1,250 - AO353_00010 0.16 -1.4
1,250 - AO353_00010 0.16 -1.5
1,250 - AO353_00010 0.16 +1.5
1,250 - AO353_00010 0.16 +0.9
1,251 + AO353_00010 0.16 +0.4
1,251 + AO353_00010 0.16 +0.1
1,251 + AO353_00010 0.16 -0.7
1,251 + AO353_00010 0.16 -0.5
1,251 + AO353_00010 0.16 -1.0
1,252 - AO353_00010 0.16 -0.6
1,252 - AO353_00010 0.16 +0.7
1,252 - AO353_00010 0.16 -2.2
1,252 - AO353_00010 0.16 -0.1
1,253 + AO353_00010 0.16 +0.4
1,253 + AO353_00010 0.16 +0.9
1,253 + AO353_00010 0.16 +0.9
1,253 + AO353_00010 0.16 -0.3
1,253 + AO353_00010 0.16 +0.5
1,254 - AO353_00010 0.16 +0.2
1,254 - AO353_00010 0.16 +2.1
1,254 - AO353_00010 0.16 +0.9
1,254 - AO353_00010 0.16 +0.1
1,254 - AO353_00010 0.16 +0.9
1,254 - AO353_00010 0.16 -0.5
1,254 - AO353_00010 0.16 -1.5
1,254 - AO353_00010 0.16 +0.1
1,254 - AO353_00010 0.16 -0.1
1,312 + AO353_00010 0.21 +0.0
1,312 + AO353_00010 0.21 -0.7
1,312 + AO353_00010 0.21 +0.9
1,313 - AO353_00010 0.22 +0.1
1,497 + AO353_00010 0.38 -1.5
1,498 - AO353_00010 0.38 +0.7
1,512 + AO353_00010 0.40 -0.7
1,512 + AO353_00010 0.40 +0.9
1,513 - AO353_00010 0.40 -0.7
1,513 - AO353_00010 0.40 -0.7
1,513 - AO353_00010 0.40 -0.7
1,540 + AO353_00010 0.42 +0.7
1,541 - AO353_00010 0.42 -0.1
1,541 - AO353_00010 0.42 -1.1
1,541 - AO353_00010 0.42 +1.1
1,541 - AO353_00010 0.42 -1.5
1,551 + AO353_00010 0.43 +0.1
1,551 + AO353_00010 0.43 +1.9
1,551 + AO353_00010 0.43 -0.0
1,551 + AO353_00010 0.43 -1.9
1,551 + AO353_00010 0.43 -0.5
1,552 - AO353_00010 0.43 -0.9
1,552 - AO353_00010 0.43 -0.7
1,552 - AO353_00010 0.43 +2.5
1,552 - AO353_00010 0.43 -0.5
1,552 - AO353_00010 0.43 -0.4
1,552 - AO353_00010 0.43 +0.1
1,612 - AO353_00010 0.49 -0.5
1,666 + AO353_00010 0.54 -0.5
1,666 + AO353_00010 0.54 -0.1
1,688 - AO353_00010 0.56 +0.9
1,688 - AO353_00010 0.56 +0.6
2,001 + AO353_00010 0.84 +0.7
2,001 + AO353_00010 0.84 -0.1
2,001 + AO353_00010 0.84 -0.0
2,001 + AO353_00010 0.84 -0.6
2,001 + AO353_00010 0.84 -1.5
2,001 + AO353_00010 0.84 -0.1
2,001 + AO353_00010 0.84 -1.4
2,001 + AO353_00010 0.84 +0.9
2,001 + AO353_00010 0.84 -0.8
2,001 + AO353_00010 0.84 -0.9
2,001 + AO353_00010 0.84 +1.9
2,001 + AO353_00010 0.84 -1.6
2,002 - AO353_00010 0.84 +0.4
2,002 - AO353_00010 0.84 -0.4
2,002 - AO353_00010 0.84 +0.6
2,002 - AO353_00010 0.84 +1.9
2,002 - AO353_00010 0.84 +0.9

Or see this region's nucleotide sequence