Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3663 and Shewana3_3664 are separated by 14 nucleotides Shewana3_3664 and Shewana3_3665 overlap by 14 nucleotides Shewana3_3665 and Shewana3_3666 overlap by 4 nucleotides Shewana3_3666 and Shewana3_3667 overlap by 4 nucleotides
Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802
_3663
Shewana3_3664: Shewana3_3664 - MSHA biogenesis protein MshK (RefSeq), at 4,401,817 to 4,402,134
_3664
Shewana3_3665: Shewana3_3665 - MSHA biogenesis protein MshJ (RefSeq), at 4,402,121 to 4,402,771
_3665
Shewana3_3666: Shewana3_3666 - fimbrial assembly family protein (RefSeq), at 4,402,768 to 4,403,370
_3666
Shewana3_3667: Shewana3_3667 - biogenesis protein MshI (RefSeq), at 4,403,367 to 4,404,245
_3667
Position (kb)
4402
4403
4404 Strain fitness (log2 ratio)
-1
0
1
2 at 4401.861 kb on + strand, within Shewana3_3664 at 4401.896 kb on + strand, within Shewana3_3664 at 4401.904 kb on - strand, within Shewana3_3664 at 4401.906 kb on + strand, within Shewana3_3664 at 4401.914 kb on - strand, within Shewana3_3664 at 4401.926 kb on + strand, within Shewana3_3664 at 4402.051 kb on + strand, within Shewana3_3664 at 4402.112 kb on + strand at 4402.247 kb on - strand, within Shewana3_3665 at 4402.740 kb on - strand at 4402.825 kb on - strand at 4403.052 kb on + strand, within Shewana3_3666 at 4403.052 kb on + strand, within Shewana3_3666 at 4403.283 kb on + strand, within Shewana3_3666 at 4403.291 kb on - strand, within Shewana3_3666 at 4403.475 kb on - strand, within Shewana3_3667 at 4403.489 kb on + strand, within Shewana3_3667 at 4403.497 kb on - strand, within Shewana3_3667 at 4403.625 kb on - strand, within Shewana3_3667 at 4403.631 kb on - strand, within Shewana3_3667 at 4403.638 kb on + strand, within Shewana3_3667 at 4403.660 kb on + strand, within Shewana3_3667 at 4403.662 kb on + strand, within Shewana3_3667 at 4403.677 kb on + strand, within Shewana3_3667 at 4403.700 kb on + strand, within Shewana3_3667 at 4403.726 kb on - strand, within Shewana3_3667 at 4403.857 kb on + strand, within Shewana3_3667 at 4403.868 kb on - strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4404.109 kb on - strand, within Shewana3_3667 at 4404.129 kb on + strand, within Shewana3_3667 at 4404.151 kb on + strand, within Shewana3_3667 at 4404.173 kb on + strand at 4404.181 kb on - strand at 4404.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 4,401,861 + Shewana3_3664 0.14 -0.1 4,401,896 + Shewana3_3664 0.25 -1.0 4,401,904 - Shewana3_3664 0.27 +0.7 4,401,906 + Shewana3_3664 0.28 -0.5 4,401,914 - Shewana3_3664 0.31 -0.1 4,401,926 + Shewana3_3664 0.34 +2.0 4,402,051 + Shewana3_3664 0.74 -1.3 4,402,112 + +1.0 4,402,247 - Shewana3_3665 0.19 -0.3 4,402,740 - +0.5 4,402,825 - -0.1 4,403,052 + Shewana3_3666 0.47 -0.7 4,403,052 + Shewana3_3666 0.47 +1.0 4,403,283 + Shewana3_3666 0.85 +1.0 4,403,291 - Shewana3_3666 0.87 +1.1 4,403,475 - Shewana3_3667 0.12 -0.0 4,403,489 + Shewana3_3667 0.14 +1.0 4,403,497 - Shewana3_3667 0.15 +0.2 4,403,625 - Shewana3_3667 0.29 +0.2 4,403,631 - Shewana3_3667 0.30 -0.2 4,403,638 + Shewana3_3667 0.31 -0.6 4,403,660 + Shewana3_3667 0.33 -1.6 4,403,662 + Shewana3_3667 0.34 +1.6 4,403,677 + Shewana3_3667 0.35 -1.1 4,403,700 + Shewana3_3667 0.38 +1.0 4,403,726 - Shewana3_3667 0.41 -0.2 4,403,857 + Shewana3_3667 0.56 -0.4 4,403,868 - Shewana3_3667 0.57 +0.3 4,403,949 + Shewana3_3667 0.66 -1.1 4,403,949 + Shewana3_3667 0.66 +0.7 4,403,949 + Shewana3_3667 0.66 -0.2 4,403,957 - Shewana3_3667 0.67 +0.1 4,403,957 - Shewana3_3667 0.67 -0.3 4,404,109 - Shewana3_3667 0.84 +0.0 4,404,129 + Shewana3_3667 0.87 +0.2 4,404,151 + Shewana3_3667 0.89 +0.2 4,404,173 + +0.8 4,404,181 - -0.3 4,404,181 - +0.9
Or see this region's nucleotide sequence