Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3595 and Shewana3_3596 are separated by 385 nucleotides Shewana3_3596 and Shewana3_3597 are separated by 65 nucleotides
Shewana3_3595: Shewana3_3595 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 4,317,768 to 4,319,627
_3595
Shewana3_3596: Shewana3_3596 - hypothetical protein (RefSeq), at 4,320,013 to 4,320,384
_3596
Shewana3_3597: Shewana3_3597 - major facilitator transporter (RefSeq), at 4,320,450 to 4,321,646
_3597
Position (kb)
4320
4321 Strain fitness (log2 ratio)
-1
0
1
2 at 4319.116 kb on + strand, within Shewana3_3595 at 4319.552 kb on + strand at 4319.622 kb on + strand at 4319.901 kb on - strand at 4319.957 kb on + strand at 4319.984 kb on + strand at 4320.128 kb on + strand, within Shewana3_3596 at 4320.128 kb on + strand, within Shewana3_3596 at 4320.128 kb on + strand, within Shewana3_3596 at 4320.197 kb on - strand, within Shewana3_3596 at 4320.299 kb on + strand, within Shewana3_3596 at 4320.328 kb on - strand, within Shewana3_3596 at 4320.463 kb on - strand at 4320.703 kb on + strand, within Shewana3_3597 at 4320.711 kb on - strand, within Shewana3_3597 at 4321.043 kb on + strand, within Shewana3_3597 at 4321.043 kb on + strand, within Shewana3_3597 at 4321.097 kb on + strand, within Shewana3_3597 at 4321.097 kb on + strand, within Shewana3_3597 at 4321.097 kb on + strand, within Shewana3_3597 at 4321.105 kb on - strand, within Shewana3_3597 at 4321.105 kb on - strand, within Shewana3_3597 at 4321.128 kb on + strand, within Shewana3_3597 at 4321.136 kb on - strand, within Shewana3_3597 at 4321.236 kb on + strand, within Shewana3_3597 at 4321.343 kb on - strand, within Shewana3_3597
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 4,319,116 + Shewana3_3595 0.72 -0.4 4,319,552 + -0.0 4,319,622 + +0.1 4,319,901 - -0.5 4,319,957 + -1.6 4,319,984 + -0.4 4,320,128 + Shewana3_3596 0.31 +1.7 4,320,128 + Shewana3_3596 0.31 -0.7 4,320,128 + Shewana3_3596 0.31 -0.4 4,320,197 - Shewana3_3596 0.49 +0.4 4,320,299 + Shewana3_3596 0.77 +0.1 4,320,328 - Shewana3_3596 0.85 +0.9 4,320,463 - -0.2 4,320,703 + Shewana3_3597 0.21 +1.0 4,320,711 - Shewana3_3597 0.22 +0.4 4,321,043 + Shewana3_3597 0.50 -0.5 4,321,043 + Shewana3_3597 0.50 -0.8 4,321,097 + Shewana3_3597 0.54 -1.4 4,321,097 + Shewana3_3597 0.54 -0.9 4,321,097 + Shewana3_3597 0.54 -0.3 4,321,105 - Shewana3_3597 0.55 -0.2 4,321,105 - Shewana3_3597 0.55 -0.4 4,321,128 + Shewana3_3597 0.57 -0.6 4,321,136 - Shewana3_3597 0.57 +0.2 4,321,236 + Shewana3_3597 0.66 +2.3 4,321,343 - Shewana3_3597 0.75 -0.1
Or see this region's nucleotide sequence