Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3418
Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,088,591 | + | +0.9 | |||
4,088,617 | + | -1.7 | |||
4,088,809 | + | Shewana3_3418 | 0.22 | +0.2 | |
4,088,911 | - | Shewana3_3418 | 0.32 | -0.2 | |
4,088,978 | - | Shewana3_3418 | 0.39 | -1.1 | |
4,089,054 | - | Shewana3_3418 | 0.46 | -0.7 | |
4,089,070 | - | Shewana3_3418 | 0.48 | -0.1 | |
4,089,113 | - | Shewana3_3418 | 0.52 | -0.4 | |
4,089,346 | - | Shewana3_3418 | 0.75 | -0.1 | |
4,089,410 | + | Shewana3_3418 | 0.81 | +0.9 | |
4,089,418 | - | Shewana3_3418 | 0.82 | -0.1 | |
4,089,488 | + | Shewana3_3418 | 0.89 | +0.9 | |
4,089,610 | + | -0.7 | |||
4,089,711 | + | +0.9 | |||
4,089,739 | - | +0.1 | |||
4,089,828 | - | -0.4 | |||
4,089,849 | - | -0.0 | |||
4,090,036 | + | -0.7 | |||
4,090,309 | + | Shewana3_3419 | 0.12 | -0.6 | |
4,090,317 | - | Shewana3_3419 | 0.12 | -0.4 | |
4,090,422 | - | Shewana3_3419 | 0.14 | -0.6 | |
4,090,593 | + | Shewana3_3419 | 0.18 | -0.0 |
Or see this region's nucleotide sequence