Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3369 and Shewana3_3370 are separated by 120 nucleotides Shewana3_3370 and Shewana3_3371 are separated by 588 nucleotides
Shewana3_3369: Shewana3_3369 - beta-lactamase (RefSeq), at 4,040,739 to 4,041,932
_3369
Shewana3_3370: Shewana3_3370 - hypothetical protein (RefSeq), at 4,042,053 to 4,042,370
_3370
Shewana3_3371: Shewana3_3371 - hypothetical protein (RefSeq), at 4,042,959 to 4,043,522
_3371
Position (kb)
4042
4043 Strain fitness (log2 ratio)
-2
-1
0
1 at 4041.233 kb on + strand, within Shewana3_3369 at 4041.241 kb on - strand, within Shewana3_3369 at 4041.294 kb on + strand, within Shewana3_3369 at 4041.322 kb on + strand, within Shewana3_3369 at 4041.412 kb on + strand, within Shewana3_3369 at 4041.417 kb on + strand, within Shewana3_3369 at 4041.444 kb on - strand, within Shewana3_3369 at 4041.799 kb on - strand, within Shewana3_3369 at 4041.993 kb on + strand at 4041.999 kb on + strand at 4042.007 kb on - strand at 4042.007 kb on - strand at 4042.150 kb on + strand, within Shewana3_3370 at 4042.230 kb on - strand, within Shewana3_3370 at 4042.384 kb on - strand at 4042.510 kb on - strand at 4042.630 kb on - strand at 4042.630 kb on - strand at 4042.667 kb on - strand at 4042.847 kb on + strand at 4042.892 kb on + strand at 4042.897 kb on + strand at 4042.897 kb on - strand at 4042.999 kb on + strand at 4043.002 kb on - strand at 4043.262 kb on + strand, within Shewana3_3371 at 4043.269 kb on + strand, within Shewana3_3371
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 4,041,233 + Shewana3_3369 0.41 -1.4 4,041,241 - Shewana3_3369 0.42 -0.4 4,041,294 + Shewana3_3369 0.46 -2.1 4,041,322 + Shewana3_3369 0.49 +0.8 4,041,412 + Shewana3_3369 0.56 -0.9 4,041,417 + Shewana3_3369 0.57 -0.7 4,041,444 - Shewana3_3369 0.59 -0.4 4,041,799 - Shewana3_3369 0.89 +0.1 4,041,993 + +0.9 4,041,999 + +0.9 4,042,007 - +0.1 4,042,007 - +0.3 4,042,150 + Shewana3_3370 0.31 -1.7 4,042,230 - Shewana3_3370 0.56 -0.7 4,042,384 - -1.2 4,042,510 - -0.0 4,042,630 - -0.1 4,042,630 - -0.7 4,042,667 - +0.3 4,042,847 + -0.3 4,042,892 + -0.2 4,042,897 + -0.2 4,042,897 - -0.5 4,042,999 + +0.6 4,043,002 - +0.9 4,043,262 + Shewana3_3371 0.54 -0.7 4,043,269 + Shewana3_3371 0.55 -0.4
Or see this region's nucleotide sequence