Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3370

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3369 and Shewana3_3370 are separated by 120 nucleotidesShewana3_3370 and Shewana3_3371 are separated by 588 nucleotides Shewana3_3369: Shewana3_3369 - beta-lactamase (RefSeq), at 4,040,739 to 4,041,932 _3369 Shewana3_3370: Shewana3_3370 - hypothetical protein (RefSeq), at 4,042,053 to 4,042,370 _3370 Shewana3_3371: Shewana3_3371 - hypothetical protein (RefSeq), at 4,042,959 to 4,043,522 _3371 Position (kb) 4042 4043Strain fitness (log2 ratio) -2 -1 0 1at 4041.233 kb on + strand, within Shewana3_3369at 4041.241 kb on - strand, within Shewana3_3369at 4041.294 kb on + strand, within Shewana3_3369at 4041.322 kb on + strand, within Shewana3_3369at 4041.412 kb on + strand, within Shewana3_3369at 4041.417 kb on + strand, within Shewana3_3369at 4041.444 kb on - strand, within Shewana3_3369at 4041.799 kb on - strand, within Shewana3_3369at 4041.993 kb on + strandat 4041.999 kb on + strandat 4042.007 kb on - strandat 4042.007 kb on - strandat 4042.150 kb on + strand, within Shewana3_3370at 4042.230 kb on - strand, within Shewana3_3370at 4042.384 kb on - strandat 4042.510 kb on - strandat 4042.630 kb on - strandat 4042.630 kb on - strandat 4042.667 kb on - strandat 4042.847 kb on + strandat 4042.892 kb on + strandat 4042.897 kb on + strandat 4042.897 kb on - strandat 4042.999 kb on + strandat 4043.002 kb on - strandat 4043.262 kb on + strand, within Shewana3_3371at 4043.269 kb on + strand, within Shewana3_3371

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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4,041,233 + Shewana3_3369 0.41 -1.4
4,041,241 - Shewana3_3369 0.42 -0.4
4,041,294 + Shewana3_3369 0.46 -2.1
4,041,322 + Shewana3_3369 0.49 +0.8
4,041,412 + Shewana3_3369 0.56 -0.9
4,041,417 + Shewana3_3369 0.57 -0.7
4,041,444 - Shewana3_3369 0.59 -0.4
4,041,799 - Shewana3_3369 0.89 +0.1
4,041,993 + +0.9
4,041,999 + +0.9
4,042,007 - +0.1
4,042,007 - +0.3
4,042,150 + Shewana3_3370 0.31 -1.7
4,042,230 - Shewana3_3370 0.56 -0.7
4,042,384 - -1.2
4,042,510 - -0.0
4,042,630 - -0.1
4,042,630 - -0.7
4,042,667 - +0.3
4,042,847 + -0.3
4,042,892 + -0.2
4,042,897 + -0.2
4,042,897 - -0.5
4,042,999 + +0.6
4,043,002 - +0.9
4,043,262 + Shewana3_3371 0.54 -0.7
4,043,269 + Shewana3_3371 0.55 -0.4

Or see this region's nucleotide sequence