Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3142 and Shewana3_3143 are separated by 72 nucleotides Shewana3_3143 and Shewana3_3144 are separated by 107 nucleotides
Shewana3_3142: Shewana3_3142 - peptidase M28 (RefSeq), at 3,767,118 to 3,768,524
_3142
Shewana3_3143: Shewana3_3143 - hypothetical protein (RefSeq), at 3,768,597 to 3,769,370
_3143
Shewana3_3144: Shewana3_3144 - amino acid carrier protein (RefSeq), at 3,769,478 to 3,770,944
_3144
Position (kb)
3768
3769
3770 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3767.616 kb on + strand, within Shewana3_3142 at 3767.624 kb on - strand, within Shewana3_3142 at 3767.645 kb on - strand, within Shewana3_3142 at 3767.710 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.743 kb on - strand, within Shewana3_3142 at 3767.797 kb on - strand, within Shewana3_3142 at 3767.855 kb on + strand, within Shewana3_3142 at 3768.113 kb on + strand, within Shewana3_3142 at 3768.114 kb on + strand, within Shewana3_3142 at 3768.248 kb on - strand, within Shewana3_3142 at 3768.350 kb on - strand, within Shewana3_3142 at 3768.396 kb on + strand at 3768.396 kb on + strand at 3768.397 kb on - strand at 3768.429 kb on - strand at 3768.429 kb on - strand at 3768.503 kb on + strand at 3768.503 kb on + strand at 3768.511 kb on - strand at 3768.519 kb on + strand at 3768.569 kb on - strand at 3768.617 kb on + strand at 3768.794 kb on + strand, within Shewana3_3143 at 3768.930 kb on - strand, within Shewana3_3143 at 3769.012 kb on - strand, within Shewana3_3143 at 3769.073 kb on + strand, within Shewana3_3143 at 3769.073 kb on + strand, within Shewana3_3143 at 3769.166 kb on - strand, within Shewana3_3143 at 3769.199 kb on - strand, within Shewana3_3143 at 3769.251 kb on + strand, within Shewana3_3143 at 3769.407 kb on - strand at 3769.803 kb on - strand, within Shewana3_3144 at 3770.010 kb on - strand, within Shewana3_3144 at 3770.014 kb on + strand, within Shewana3_3144 at 3770.095 kb on - strand, within Shewana3_3144 at 3770.122 kb on - strand, within Shewana3_3144 at 3770.155 kb on - strand, within Shewana3_3144 at 3770.160 kb on + strand, within Shewana3_3144 at 3770.214 kb on - strand, within Shewana3_3144 at 3770.257 kb on + strand, within Shewana3_3144 at 3770.335 kb on - strand, within Shewana3_3144
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,767,616 + Shewana3_3142 0.35 -1.0 3,767,624 - Shewana3_3142 0.36 +0.8 3,767,645 - Shewana3_3142 0.37 +0.8 3,767,710 + Shewana3_3142 0.42 -0.2 3,767,715 + Shewana3_3142 0.42 -0.6 3,767,715 + Shewana3_3142 0.42 -0.4 3,767,715 + Shewana3_3142 0.42 +1.0 3,767,715 + Shewana3_3142 0.42 -2.0 3,767,743 - Shewana3_3142 0.44 +0.8 3,767,797 - Shewana3_3142 0.48 -0.8 3,767,855 + Shewana3_3142 0.52 +0.3 3,768,113 + Shewana3_3142 0.71 +2.0 3,768,114 + Shewana3_3142 0.71 +0.8 3,768,248 - Shewana3_3142 0.80 -1.2 3,768,350 - Shewana3_3142 0.88 -0.2 3,768,396 + -0.2 3,768,396 + +0.1 3,768,397 - +1.2 3,768,429 - -0.2 3,768,429 - +0.8 3,768,503 + -0.5 3,768,503 + -0.1 3,768,511 - -0.2 3,768,519 + +0.3 3,768,569 - -0.3 3,768,617 + +0.8 3,768,794 + Shewana3_3143 0.25 +0.5 3,768,930 - Shewana3_3143 0.43 -0.2 3,769,012 - Shewana3_3143 0.54 -1.3 3,769,073 + Shewana3_3143 0.61 +0.8 3,769,073 + Shewana3_3143 0.61 +0.8 3,769,166 - Shewana3_3143 0.74 -1.9 3,769,199 - Shewana3_3143 0.78 +0.0 3,769,251 + Shewana3_3143 0.84 +0.8 3,769,407 - +1.4 3,769,803 - Shewana3_3144 0.22 -0.2 3,770,010 - Shewana3_3144 0.36 +0.4 3,770,014 + Shewana3_3144 0.37 -0.2 3,770,095 - Shewana3_3144 0.42 -0.4 3,770,122 - Shewana3_3144 0.44 +0.1 3,770,155 - Shewana3_3144 0.46 +0.7 3,770,160 + Shewana3_3144 0.46 +0.8 3,770,214 - Shewana3_3144 0.50 +0.3 3,770,257 + Shewana3_3144 0.53 +0.8 3,770,335 - Shewana3_3144 0.58 -0.4
Or see this region's nucleotide sequence