Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2795 and Shewana3_2796 are separated by 184 nucleotides Shewana3_2796 and Shewana3_2797 are separated by 265 nucleotides
Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351
_2795
Shewana3_2796: Shewana3_2796 - hypothetical protein (RefSeq), at 3,337,536 to 3,339,359
_2796
Shewana3_2797: Shewana3_2797 - potassium efflux system protein (RefSeq), at 3,339,625 to 3,341,571
_2797
Position (kb)
3337
3338
3339
3340 Strain fitness (log2 ratio)
-2
-1
0
1 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.644 kb on - strand, within Shewana3_2795 at 3336.696 kb on - strand, within Shewana3_2795 at 3336.789 kb on - strand, within Shewana3_2795 at 3337.014 kb on - strand, within Shewana3_2795 at 3337.184 kb on + strand at 3337.189 kb on + strand at 3337.290 kb on + strand at 3337.541 kb on - strand at 3337.714 kb on - strand at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.864 kb on + strand, within Shewana3_2796 at 3337.872 kb on - strand, within Shewana3_2796 at 3337.875 kb on - strand, within Shewana3_2796 at 3338.008 kb on + strand, within Shewana3_2796 at 3338.023 kb on - strand, within Shewana3_2796 at 3338.040 kb on - strand, within Shewana3_2796 at 3338.258 kb on - strand, within Shewana3_2796 at 3338.298 kb on + strand, within Shewana3_2796 at 3338.404 kb on + strand, within Shewana3_2796 at 3338.556 kb on - strand, within Shewana3_2796 at 3338.987 kb on + strand, within Shewana3_2796 at 3339.119 kb on - strand, within Shewana3_2796 at 3339.152 kb on - strand, within Shewana3_2796 at 3339.195 kb on + strand at 3339.340 kb on - strand at 3339.380 kb on + strand at 3339.466 kb on + strand at 3339.534 kb on + strand at 3339.607 kb on + strand at 3339.627 kb on + strand at 3339.638 kb on + strand at 3339.856 kb on + strand, within Shewana3_2797 at 3340.118 kb on - strand, within Shewana3_2797
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,336,644 - Shewana3_2795 0.78 +0.6 3,336,644 - Shewana3_2795 0.78 -0.2 3,336,696 - Shewana3_2795 0.80 +1.2 3,336,789 - Shewana3_2795 0.83 +0.0 3,337,014 - Shewana3_2795 0.90 +0.2 3,337,184 + +1.2 3,337,189 + +1.3 3,337,290 + +1.0 3,337,541 - -0.1 3,337,714 - -0.8 3,337,864 + Shewana3_2796 0.18 -0.4 3,337,864 + Shewana3_2796 0.18 -0.4 3,337,864 + Shewana3_2796 0.18 +0.6 3,337,872 - Shewana3_2796 0.18 +0.8 3,337,875 - Shewana3_2796 0.19 -0.5 3,338,008 + Shewana3_2796 0.26 -0.0 3,338,023 - Shewana3_2796 0.27 -0.1 3,338,040 - Shewana3_2796 0.28 -0.9 3,338,258 - Shewana3_2796 0.40 +0.3 3,338,298 + Shewana3_2796 0.42 -1.2 3,338,404 + Shewana3_2796 0.48 -1.0 3,338,556 - Shewana3_2796 0.56 -2.0 3,338,987 + Shewana3_2796 0.80 -0.9 3,339,119 - Shewana3_2796 0.87 +0.1 3,339,152 - Shewana3_2796 0.89 +0.6 3,339,195 + +0.6 3,339,340 - -1.0 3,339,380 + +0.6 3,339,466 + +0.6 3,339,534 + +0.6 3,339,607 + +1.6 3,339,627 + -0.5 3,339,638 + +0.3 3,339,856 + Shewana3_2797 0.12 +0.6 3,340,118 - Shewana3_2797 0.25 -0.6
Or see this region's nucleotide sequence