Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2693 and Shewana3_2694 are separated by 66 nucleotides Shewana3_2694 and Shewana3_2695 overlap by 4 nucleotides Shewana3_2695 and Shewana3_2696 overlap by 11 nucleotides
Shewana3_2693: Shewana3_2693 - AraC family transcriptional regulator (RefSeq), at 3,219,746 to 3,220,582
_2693
Shewana3_2694: Shewana3_2694 - AzlC family protein (RefSeq), at 3,220,649 to 3,221,416
_2694
Shewana3_2695: Shewana3_2695 - branched-chain amino acid transport (RefSeq), at 3,221,413 to 3,221,715
_2695
Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063
_2696
Position (kb)
3220
3221
3222 Strain fitness (log2 ratio)
-2
-1
0
1 at 3219.785 kb on - strand at 3219.792 kb on + strand at 3219.802 kb on + strand at 3219.810 kb on - strand at 3219.859 kb on - strand, within Shewana3_2693 at 3219.938 kb on - strand, within Shewana3_2693 at 3220.127 kb on - strand, within Shewana3_2693 at 3220.142 kb on - strand, within Shewana3_2693 at 3220.169 kb on + strand, within Shewana3_2693 at 3220.382 kb on - strand, within Shewana3_2693 at 3220.446 kb on + strand, within Shewana3_2693 at 3220.600 kb on + strand at 3220.662 kb on + strand at 3220.747 kb on + strand, within Shewana3_2694 at 3220.936 kb on + strand, within Shewana3_2694 at 3221.044 kb on + strand, within Shewana3_2694 at 3221.078 kb on + strand, within Shewana3_2694 at 3221.079 kb on - strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.284 kb on - strand, within Shewana3_2694 at 3221.340 kb on + strand at 3221.355 kb on - strand at 3221.367 kb on - strand at 3221.680 kb on + strand, within Shewana3_2695 at 3221.734 kb on - strand at 3221.743 kb on - strand at 3221.855 kb on - strand, within Shewana3_2696 at 3221.918 kb on - strand, within Shewana3_2696 at 3221.929 kb on + strand, within Shewana3_2696 at 3221.937 kb on - strand, within Shewana3_2696 at 3221.942 kb on + strand, within Shewana3_2696 at 3222.127 kb on - strand, within Shewana3_2696 at 3222.171 kb on + strand, within Shewana3_2696 at 3222.198 kb on - strand, within Shewana3_2696 at 3222.250 kb on + strand, within Shewana3_2696 at 3222.282 kb on - strand, within Shewana3_2696
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,219,785 - -1.9 3,219,792 + +0.6 3,219,802 + +0.6 3,219,810 - -0.4 3,219,859 - Shewana3_2693 0.14 +0.2 3,219,938 - Shewana3_2693 0.23 +0.4 3,220,127 - Shewana3_2693 0.46 -0.3 3,220,142 - Shewana3_2693 0.47 -0.8 3,220,169 + Shewana3_2693 0.51 -0.3 3,220,382 - Shewana3_2693 0.76 -0.9 3,220,446 + Shewana3_2693 0.84 -0.4 3,220,600 + -0.4 3,220,662 + +0.6 3,220,747 + Shewana3_2694 0.13 -1.9 3,220,936 + Shewana3_2694 0.37 -1.4 3,221,044 + Shewana3_2694 0.51 -1.3 3,221,078 + Shewana3_2694 0.56 -0.4 3,221,079 - Shewana3_2694 0.56 +0.6 3,221,106 + Shewana3_2694 0.60 -0.4 3,221,106 + Shewana3_2694 0.60 +0.3 3,221,284 - Shewana3_2694 0.83 +0.6 3,221,340 + -0.6 3,221,355 - +0.6 3,221,367 - -0.0 3,221,680 + Shewana3_2695 0.88 +0.6 3,221,734 - +0.2 3,221,743 - +0.6 3,221,855 - Shewana3_2696 0.11 -1.4 3,221,918 - Shewana3_2696 0.16 +0.2 3,221,929 + Shewana3_2696 0.16 +0.6 3,221,937 - Shewana3_2696 0.17 +1.6 3,221,942 + Shewana3_2696 0.17 +0.6 3,222,127 - Shewana3_2696 0.31 +0.2 3,222,171 + Shewana3_2696 0.34 -0.4 3,222,198 - Shewana3_2696 0.36 +0.6 3,222,250 + Shewana3_2696 0.40 +0.6 3,222,282 - Shewana3_2696 0.42 +0.3
Or see this region's nucleotide sequence