Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2404
Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,881,388 | + | +1.1 | |||
2,881,388 | - | +0.3 | |||
2,881,450 | + | -0.5 | |||
2,881,476 | - | Shewana3_2403 | 0.11 | -0.1 | |
2,881,476 | - | Shewana3_2403 | 0.11 | +0.4 | |
2,881,772 | - | Shewana3_2403 | 0.45 | -0.3 | |
2,882,020 | - | Shewana3_2403 | 0.74 | +0.3 | |
2,882,216 | + | +0.5 | |||
2,882,511 | - | Shewana3_2404 | 0.36 | +0.7 | |
2,882,634 | + | Shewana3_2404 | 0.63 | +1.0 | |
2,882,642 | - | Shewana3_2404 | 0.65 | +0.4 | |
2,882,696 | - | Shewana3_2404 | 0.77 | +0.6 | |
2,882,704 | + | Shewana3_2404 | 0.79 | -0.1 | |
2,882,712 | - | Shewana3_2404 | 0.80 | -0.5 | |
2,882,718 | - | Shewana3_2404 | 0.82 | -0.5 | |
2,882,909 | - | +1.5 | |||
2,883,002 | - | Shewana3_2405 | 0.18 | +0.5 | |
2,883,101 | + | Shewana3_2405 | 0.28 | +1.3 | |
2,883,299 | + | Shewana3_2405 | 0.47 | -1.4 | |
2,883,378 | + | Shewana3_2405 | 0.55 | +0.3 | |
2,883,770 | - | +0.5 |
Or see this region's nucleotide sequence