Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2396 and Shewana3_2397 are separated by 286 nucleotides Shewana3_2397 and Shewana3_2398 are separated by 84 nucleotides Shewana3_2398 and Shewana3_2399 are separated by 609 nucleotides
Shewana3_2396: Shewana3_2396 - hypothetical protein (RefSeq), at 2,875,448 to 2,875,888
_2396
Shewana3_2397: Shewana3_2397 - hypothetical protein (RefSeq), at 2,876,175 to 2,876,732
_2397
Shewana3_2398: Shewana3_2398 - hypothetical protein (RefSeq), at 2,876,817 to 2,877,422
_2398
Shewana3_2399: Shewana3_2399 - protein tyrosine phosphatase (RefSeq), at 2,878,032 to 2,878,547
_2399
Position (kb)
2876
2877
2878 Strain fitness (log2 ratio)
-1
0
1
2 at 2875.940 kb on - strand at 2876.081 kb on + strand at 2876.286 kb on + strand, within Shewana3_2397 at 2876.546 kb on + strand, within Shewana3_2397 at 2876.705 kb on + strand at 2876.778 kb on - strand at 2876.808 kb on - strand at 2877.040 kb on - strand, within Shewana3_2398 at 2877.289 kb on + strand, within Shewana3_2398 at 2877.297 kb on - strand, within Shewana3_2398 at 2877.833 kb on + strand at 2877.963 kb on + strand at 2878.143 kb on - strand, within Shewana3_2399 at 2878.182 kb on - strand, within Shewana3_2399 at 2878.348 kb on + strand, within Shewana3_2399 at 2878.356 kb on - strand, within Shewana3_2399
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 2,875,940 - +1.2 2,876,081 + +0.3 2,876,286 + Shewana3_2397 0.20 +0.5 2,876,546 + Shewana3_2397 0.66 -0.5 2,876,705 + +0.5 2,876,778 - +2.1 2,876,808 - +0.5 2,877,040 - Shewana3_2398 0.37 +0.5 2,877,289 + Shewana3_2398 0.78 +0.5 2,877,297 - Shewana3_2398 0.79 -0.5 2,877,833 + +0.5 2,877,963 + +0.5 2,878,143 - Shewana3_2399 0.22 +0.5 2,878,182 - Shewana3_2399 0.29 -0.5 2,878,348 + Shewana3_2399 0.61 +0.5 2,878,356 - Shewana3_2399 0.63 -0.5
Or see this region's nucleotide sequence